Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f10r
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 85 1e-17
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.95
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 28 1.3
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 28 1.3
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 26 5.1
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 8.9
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 8.9
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 8.9
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 85.0 bits (201), Expect = 1e-17
Identities = 74/258 (28%), Positives = 109/258 (42%), Gaps = 9/258 (3%)
Frame = -2
Query: 747 IPEDRNETDQR--KTAQIEVENNCNSNLREILAN--LIFIACIDCHKSLIQHSTKLYLCD 580
I E+ N D K+ Q +V N+ + IL + + C + +QH+ LY+ D
Sbjct: 439 IVEEGNSIDLESIKSLQKQVINSMHVLATNILTEHKYVGLVCPTRRIAAVQHNIGLYVVD 498
Query: 579 XXXXXXXXXXXXXLYDFQNFGFIKLSNPLPLEELFVLGLNGSTQNSEQDSELGDTGEMAQ 400
L +F N+G L PL + +LF + +NG SE +
Sbjct: 499 YGKLSYHLFYQICLTEFGNYGEFVLETPLSISDLFEI-VNGDEDKSESEK---------- 547
Query: 399 HMTQLLLSKRAMLYEYFSLEVNGEGEXXXXXXXLDGHAPFVGALPTYLVRLVTEV-NWDS 223
T+LL+S+R ML +YFS+ V G + P LP + L + +W
Sbjct: 548 -FTRLLVSRRDMLKDYFSISVTSGGLLTAVPMLSPKYHPPFEQLPLLISSLTPKFFDWLD 606
Query: 222 EKECFETFCRQTAKFYAQPNP----DPNVESVSSEHRRQEHVIFPAIRKYFLPPSSFISN 55
EK C + AKFY P P + +V+S+ S E +FP R+ + P
Sbjct: 607 EKSCLNGIMKAIAKFYV-PLPLSYEESDVKSIRSLESCLEDYLFPEFRRRVICPKKVFEE 665
Query: 54 GAILQIASLNDLYKVFER 1
I QI SL LY VFER
Sbjct: 666 KCIYQITSLPRLYNVFER 683
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.7 bits (61), Expect = 0.95
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 197 QKVSKHSFSESQLTSVTRRTKYVGKAPTNGA*PSKSNGRANNSPSP 334
++VSKH + ++ V R+ G+ PT + P+KS + ++ P
Sbjct: 469 KRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQSSKHARRP 514
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = -2
Query: 510 KLSNPLPLEELFVLGLNGSTQNSEQDSELGDTGEMAQHMTQLLLSKRAMLYEYFSL 343
+L N LPL + +LGL T + E+ +EL T +++ LL+SK FS+
Sbjct: 306 RLLNGLPLNLVKILGLKPDTSSFEKCAELMLTNQISTR--SLLISKSIKKLTSFSI 359
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 109 HVLLSPVLRRHALDIRVRIRLSIKLGRLSAESLKALLFRIPI 234
H++ + RH+ + +IR + GRL+ E ALL IPI
Sbjct: 24 HIIFMDAILRHSAYVLHKIRTILTFGRLTDEQ-TALLMGIPI 64
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 249 LVTEVNWDSEKECFETFCRQTAKFYAQPNPDPNVESVSSE 130
+ T + W ++ T C++T F+ P P NV ++ S+
Sbjct: 20 ITTLLGWRLQQSSVVT-CQETIMFFNAPEPSTNVFTIQSK 58
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 645 ILN*PRFPLD-LSYNCSPLLSELFYAGQFRFYPLVWNV 755
++N RF + YN S +F+AG FR + +VW V
Sbjct: 845 LINLFRFSFSFILYNLLISTSTVFFAGFFRRHLMVWKV 882
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -1
Query: 562 GIVLRDITIRFSKLRFHQTVESIAI----GRIICSWSEREHSKLRTGF*ARRYR 413
G+ +RD + + L + ++I ++ W + EH +TGF R Y+
Sbjct: 836 GVAIRDFSAELTYLTPENSKGKLSIDHFLNKVQSRWHDEEHHYYKTGFRKRVYK 889
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2
Query: 759 LERSIPEDRNETDQRKTAQIEVENNCNSNLREILANLIFI 640
++++ PE+ E +QRK A++++E + S R + N F+
Sbjct: 495 IDKTNPEELTEEEQRKFARLDIEPSTISWNRTLDVNDRFL 534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,691
Number of Sequences: 5004
Number of extensions: 67084
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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