Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f10r
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 108 5e-24
08_01_0773 - 7481445-7481537,7481628-7481831 30 1.7
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 29 4.0
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 29 5.3
01_06_1546 + 38147846-38147853,38148413-38148986,38149160-38150011 28 7.0
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229... 28 9.3
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 108 bits (259), Expect = 5e-24
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 5/202 (2%)
Frame = -2
Query: 741 EDRNETDQRKTAQIEVENNCNSNLREILANLIFIACIDCHKSLIQHSTKLYLCDXXXXXX 562
+D + R +E++++ + L +I+ N ++ D +LIQH+T+LYL +
Sbjct: 470 KDAGDLSSRHELLVEIDSSFHPGLLDIVKNCTYVGLADEAFALIQHNTRLYLVNVVNISK 529
Query: 561 XXXXXXXLYDFQNFGFIKLSNPLPLEELFVLGLNGSTQNSEQDSELGDTGEMAQHMTQLL 382
L F NF I+LS P PL+EL V+ L S++ + + E+A+ T++L
Sbjct: 530 ELMYQQALCRFGNFNAIQLSEPAPLQELLVMALKDDELMSDEKDD--EKLEIAEVNTEIL 587
Query: 381 LSKRAMLYEYFSLEVNGEGEXXXXXXXLDGHAPFVGALPTYLVRLVTEVNWDSEKECFET 202
M+ EYFS+ ++ +G+ LD + P + LP +++ L +V WD EKECF T
Sbjct: 588 KENAEMINEYFSIHIDQDGKLTRLPVVLDQYTPDMDRLPEFVLALGNDVTWDDEKECFRT 647
Query: 201 FCRQTAKFYA-----QPNPDPN 151
FYA PNP N
Sbjct: 648 VASAVGNFYALHPPILPNPSGN 669
Score = 50.4 bits (115), Expect = 2e-06
Identities = 19/39 (48%), Positives = 29/39 (74%)
Frame = -2
Query: 117 EHVIFPAIRKYFLPPSSFISNGAILQIASLNDLYKVFER 1
+HV+FP++R + PP S ++G +Q+ASL LYK+FER
Sbjct: 717 QHVLFPSMRLFLKPPKSMATDGTFVQVASLEKLYKIFER 755
>08_01_0773 - 7481445-7481537,7481628-7481831
Length = 98
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 99 QGISRALVSCAPTTRSRH*GPD*VEHKTWPSVCRKSQSTP 218
QG++ + PT + H G + WPS+CR ++ TP
Sbjct: 29 QGLACGVAEVLPTNKLAHQGGH--RYAKWPSLCRTTRGTP 66
>03_05_0697 +
26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = -1
Query: 574 KIDGGIVLRDITIRFSKLRFHQTVESIAIGRIICSWSEREHSKLRTGF 431
++ G LRD+TI+FSK ++ESI+IG I S+ + KL GF
Sbjct: 45 RVAGFNCLRDVTIKFSK----GSLESISIGEIKLSF-RKSLVKLSFGF 87
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 342 PEKSIRRALRVCSTIVGSYVEPFLLYLRAQNPVRSFECSRSDQ 470
P K I L + VE +L YLR + P +F+C+ +Q
Sbjct: 181 PSKRIVLLLNKIDLVPKESVEKWLTYLREEMPTVAFKCNTQEQ 223
>01_06_1546 + 38147846-38147853,38148413-38148986,38149160-38150011
Length = 477
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2
Query: 720 QRKTAQIEVENNCNSNLREILANLIFIACIDCHKSLIQHS 601
QRK++ + + C S+L I+ +L+ +A I C S+++ +
Sbjct: 19 QRKSSALNFDAGCRSSLSFIVWSLVGVALIVCFFSVVRQA 58
>11_04_0365 -
16818468-16818514,16818619-16821706,16822860-16822919,
16823595-16823954
Length = 1184
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 249 LVTEVNWDSEKECFETFCR 193
LV + W+ K+C+ETFC+
Sbjct: 319 LVLDDVWNERKDCWETFCK 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,456,849
Number of Sequences: 37544
Number of extensions: 390147
Number of successful extensions: 935
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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