Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f10r
         (760 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069160-1|AAL39305.1|  504|Drosophila melanogaster GH18717p pro...   178   6e-45
AE013599-613|AAF59117.1|  664|Drosophila melanogaster CG11482-PA...   178   6e-45
AF068257-1|AAC19117.1|  663|Drosophila melanogaster mutL homolog...   177   2e-44
AY058650-1|AAL13879.1|  513|Drosophila melanogaster LD35279p pro...    29   9.1  
AE014298-1094|AAS65275.1|  646|Drosophila melanogaster CG2206-PB...    29   9.1  
AE014134-1737|AAF52837.1|  513|Drosophila melanogaster CG4709-PA...    29   9.1  

>AY069160-1|AAL39305.1|  504|Drosophila melanogaster GH18717p
           protein.
          Length = 504

 Score =  178 bits (434), Expect = 6e-45
 Identities = 93/232 (40%), Positives = 130/232 (56%)
 Frame = -2

Query: 696 VENNCNSNLREILANLIFIACIDCHKSLIQHSTKLYLCDXXXXXXXXXXXXXLYDFQNFG 517
           VE  C+  LR  L NL+++ C+D  ++L QH T+LY+C+             +Y+FQN  
Sbjct: 277 VERQCSVQLRSTLKNLVYVGCVDERRALFQHETRLYMCNTRSFSEELFYQRMIYEFQNCS 336

Query: 516 FIKLSNPLPLEELFVLGLNGSTQNSEQDSELGDTGEMAQHMTQLLLSKRAMLYEYFSLEV 337
            I +S PLPL+EL +L L   ++ +    E GD  E+A     +LL K  ++ EYF L +
Sbjct: 337 EITISPPLPLKELLILSLE--SEAAGWTPEDGDKAELADGAADILLKKAPIMREYFGLRI 394

Query: 336 NGEGEXXXXXXXLDGHAPFVGALPTYLVRLVTEVNWDSEKECFETFCRQTAKFYAQPNPD 157
           + +G        L  H P V  LP YL+RL TEV+W+ E  CFETFCR+TA+FYAQ +  
Sbjct: 395 SEDGMLESLPSLLHQHRPCVAHLPVYLLRLATEVDWEQETRCFETFCRETARFYAQLDWR 454

Query: 156 PNVESVSSEHRRQEHVIFPAIRKYFLPPSSFISNGAILQIASLNDLYKVFER 1
               +  S     EHV+FPA +KY LPP        I ++ +L  LYKVFER
Sbjct: 455 EGATAGFSRW-TMEHVLFPAFKKYLLPPPRI--KDQIYELTNLPTLYKVFER 503


>AE013599-613|AAF59117.1|  664|Drosophila melanogaster CG11482-PA
            protein.
          Length = 664

 Score =  178 bits (434), Expect = 6e-45
 Identities = 93/232 (40%), Positives = 130/232 (56%)
 Frame = -2

Query: 696  VENNCNSNLREILANLIFIACIDCHKSLIQHSTKLYLCDXXXXXXXXXXXXXLYDFQNFG 517
            VE  C+  LR  L NL+++ C+D  ++L QH T+LY+C+             +Y+FQN  
Sbjct: 437  VERQCSVQLRSTLKNLVYVGCVDERRALFQHETRLYMCNTRSFSEELFYQRMIYEFQNCS 496

Query: 516  FIKLSNPLPLEELFVLGLNGSTQNSEQDSELGDTGEMAQHMTQLLLSKRAMLYEYFSLEV 337
             I +S PLPL+EL +L L   ++ +    E GD  E+A     +LL K  ++ EYF L +
Sbjct: 497  EITISPPLPLKELLILSLE--SEAAGWTPEDGDKAELADGAADILLKKAPIMREYFGLRI 554

Query: 336  NGEGEXXXXXXXLDGHAPFVGALPTYLVRLVTEVNWDSEKECFETFCRQTAKFYAQPNPD 157
            + +G        L  H P V  LP YL+RL TEV+W+ E  CFETFCR+TA+FYAQ +  
Sbjct: 555  SEDGMLESLPSLLHQHRPCVAHLPVYLLRLATEVDWEQETRCFETFCRETARFYAQLDWR 614

Query: 156  PNVESVSSEHRRQEHVIFPAIRKYFLPPSSFISNGAILQIASLNDLYKVFER 1
                +  S     EHV+FPA +KY LPP        I ++ +L  LYKVFER
Sbjct: 615  EGATAGFSRW-TMEHVLFPAFKKYLLPPPRI--KDQIYELTNLPTLYKVFER 663


>AF068257-1|AAC19117.1|  663|Drosophila melanogaster mutL homolog
            protein.
          Length = 663

 Score =  177 bits (430), Expect = 2e-44
 Identities = 92/232 (39%), Positives = 127/232 (54%)
 Frame = -2

Query: 696  VENNCNSNLREILANLIFIACIDCHKSLIQHSTKLYLCDXXXXXXXXXXXXXLYDFQNFG 517
            VE  C+  LR  L NL+++ C+D  ++L QH T+LY+C+             +Y+FQN  
Sbjct: 437  VERQCSVQLRSTLKNLVYVGCVDERRALFQHETRLYMCNTRSFSEELFYQRMIYEFQNCS 496

Query: 516  FIKLSNPLPLEELFVLGLNGSTQNSEQDSELGDTGEMAQHMTQLLLSKRAMLYEYFSLEV 337
             I +  PLPL+EL +L L         + E  D  E+A     +LL K  ++ EYF L +
Sbjct: 497  EITICPPLPLKELLILSLESRAAGWTPEDE--DKAELADGAADILLKKAPIMREYFGLRI 554

Query: 336  NGEGEXXXXXXXLDGHAPFVGALPTYLVRLVTEVNWDSEKECFETFCRQTAKFYAQPNPD 157
            + +G        L  H P V  LP YL+RL TEV+W+ E  CFETFCR+TA+FYAQ +  
Sbjct: 555  SEDGMLESLPSLLHQHRPCVAHLPVYLLRLATEVDWEQETRCFETFCRETARFYAQLDWR 614

Query: 156  PNVESVSSEHRRQEHVIFPAIRKYFLPPSSFISNGAILQIASLNDLYKVFER 1
                +V S     EHV+FPA +KY LPP        I ++ +L  LYKVFER
Sbjct: 615  EGATAVFSRW-TMEHVLFPAFKKYLLPPR---IKDQIYELTNLPTLYKVFER 662


>AY058650-1|AAL13879.1|  513|Drosophila melanogaster LD35279p
           protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 474 VLGLNGSTQNSEQDSELGDTGEMAQHMTQLL 382
           VLG   STQ  EQ ++   T E+ QH T+ L
Sbjct: 408 VLGPGESTQQGEQVTKKAKTNELQQHSTKTL 438


>AE014298-1094|AAS65275.1|  646|Drosophila melanogaster CG2206-PB,
           isoform B protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 537 YDFQNFGFIKLSNPLPLEELFVLGLNGSTQNSEQDSELGD-TGEMAQHMTQLLLSKRAML 361
           YD     F+K SN + L+EL VL L G+   ++  + +     E+ + M    L  RAM+
Sbjct: 121 YDAYKDTFVKQSNSVELDELAVLNLAGAILRNDNTASMPRILQEIERVMVSQTLYYRAMI 180


>AE014134-1737|AAF52837.1|  513|Drosophila melanogaster CG4709-PA
           protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 474 VLGLNGSTQNSEQDSELGDTGEMAQHMTQLL 382
           VLG   STQ  EQ ++   T E+ QH T+ L
Sbjct: 408 VLGPGESTQQGEQVTKKAKTNELQQHSTKTL 438


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,246,498
Number of Sequences: 53049
Number of extensions: 691818
Number of successful extensions: 1894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1885
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3478915869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)