Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f10r
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical pr...    86   3e-17
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U40411-3|AAC47066.2|  270|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical protein
            T28A8.7 protein.
          Length = 758

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 12/245 (4%)
 Frame = -2

Query: 699  EVENNCNSNLREILANLIFIACIDCHKSLIQHSTKLYLCDXXXXXXXXXXXXXLYDFQNF 520
            E+  N + +LRE+     F+  I+  + LIQ  T LY  D             ++ F N+
Sbjct: 511  EIIANSSQSLREMFKTSTFVGSINVKQVLIQFGTSLYHLDFSTVLREFFYQISVFSFGNY 570

Query: 519  GFIKLSNPLP--LEELFVLGLNGSTQNSEQDSELGDTGEMAQHMTQLLLSKRAMLYEYFS 346
            G  +L    P  +E L +LG   + + +    E+    E      +LL     +L++YF+
Sbjct: 571  GSYRLDEEPPAIIEILELLGELSTREPNYAAFEVFANVENRFAAEKLLAEHADLLHDYFA 630

Query: 345  LEV----NGEGEXXXXXXXLDGHAPFVGALPTYLVRLVTEVNWDSEKECFETFCRQTAKF 178
            +++    NG          +    P +  LP  +  LV  V++D E+  F T CR     
Sbjct: 631  IKLDQLENGRLHITEIPSLVHYFVPQLEKLPFLIATLVLNVDYDDEQNTFRTICRAIGDL 690

Query: 177  YAQPNP----DPNVESVSSEHRRQ--EHVIFPAIRKYFLPPSSFISNGAILQIASLNDLY 16
            +         D  + + S+   +   + V+ P +++ F+PP  F   G I Q+A  +DLY
Sbjct: 691  FTLDTNFITLDKKISAFSATPWKTLIKEVLMPLVKRKFIPPEHFKQAGVIRQLADSHDLY 750

Query: 15   KVFER 1
            KVFER
Sbjct: 751  KVFER 755


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical
           protein F18C12.1 protein.
          Length = 4171

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 225 SEKECFETFCRQTAKFYAQPNPDPNVES 142
           +EKECF+ +CR+T       N   N+E+
Sbjct: 490 AEKECFDDWCRETVGLIDNKNETINLET 517


>U40411-3|AAC47066.2|  270|Caenorhabditis elegans Hypothetical
           protein B0403.3 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 264 TYLVRLVTEVNWDSEKECFETFCRQ 190
           +YL R  TE+N D + E + +FCR+
Sbjct: 209 SYLEREYTELNKDDQDELYSSFCRR 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,366,940
Number of Sequences: 27780
Number of extensions: 363678
Number of successful extensions: 903
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)