Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f10f
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   2.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.8  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    22   3.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.9  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 536 IFI*GFVSTFVLCSFCQYCKVCNMTDTRES 447
           + + GF+  FVLC  C+  +   +  T+ S
Sbjct: 1   VLLDGFIRKFVLCPECENPETELLVSTKRS 30


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 500 CSFCQYCKVCNMTDTRESL 444
           C +C+Y K  NM   RE++
Sbjct: 138 CQYCRYQKCLNMGMKREAV 156


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 455 EYQSYCTPYNIDKNC 499
           +Y  YC P +  KNC
Sbjct: 438 DYACYCPPKHTGKNC 452


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 37  KSFLFMSNNYKNIVNFQIDGPKRK 108
           KS    +NN  +  N +I GPKRK
Sbjct: 84  KSRKLNNNNVVSSTNQEIRGPKRK 107


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 218 LHYFTSSNTVHNFFTQFSN 162
           +HY  S +T H + T++ N
Sbjct: 14  VHYGWSEDTTHKYTTKYDN 32


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 228 NALKELIENSLDAKS 272
           NA+++LIE S D++S
Sbjct: 730 NAIEKLIEKSFDSRS 744


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,417
Number of Sequences: 336
Number of extensions: 3048
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)