Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f10f
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 191 6e-50
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 101 9e-23
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 29 0.57
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 4.0
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.3
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.3
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p... 25 7.0
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 7.0
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 7.0
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 9.3
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.3
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 9.3
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 9.3
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 191 bits (466), Expect = 6e-50
Identities = 97/174 (55%), Positives = 127/174 (72%), Gaps = 8/174 (4%)
Frame = +3
Query: 144 MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQI 323
+N IR L + V+N+IAAGEI++RP NA+KELIENSLDA ST+I + +K GGLK LQI
Sbjct: 3 VNSRAKIRPLDQLVINKIAAGEIIERPENAIKELIENSLDAGSTSIDVLLKDGGLKLLQI 62
Query: 324 QDNGTGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQ 503
DNG+GI+ +DL +C+RF+TSK+ + DLQ + T+GFRGEALASISH+A +T++TK +
Sbjct: 63 TDNGSGIQYDDLPYLCQRFSTSKIDNFNDLQHLQTFGFRGEALASISHVAKVTVVTKLSS 122
Query: 504 DKCAYKASYENGKLKGPI--------KACAGNNGTQITVEDLFYNVVARKGALR 641
D A+KA Y +G L PI + CAG GT IT EDLFYNV +RK AL+
Sbjct: 123 DIHAWKAFYVDGAL-APISPGMSPAPQPCAGKQGTVITAEDLFYNVRSRKSALK 175
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 101 bits (242), Expect = 9e-23
Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Frame = +3
Query: 162 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 341
++ + V++I +G+++ A+A+KEL+ENSLD+ +T I I K+ G+ +++ DNG+G
Sbjct: 4 VKPIDANTVHKICSGQVITDVASAVKELVENSLDSGATTIEIRFKNYGINSIEVVDNGSG 63
Query: 342 IRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQD--KCA 515
I D + + ++ TSK+ +EDL+ + T+GFRGEAL+S+ + + I T T + K
Sbjct: 64 IDAGDYESIGKKHFTSKITDFEDLEALQTFGFRGEALSSLCAVGQVIISTATQNEAPKGV 123
Query: 516 YKASYENGKLKGPIKACAGNNGTQITVEDLFYNVVARKGAL 638
G LK + GT + V DLF + R+ L
Sbjct: 124 QLNLDHEGSLKDKL-TIPFQRGTSVMVNDLFCTLPVRRKLL 163
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 29.1 bits (62), Expect = 0.57
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 162 IRKLSEEVVNRIA-AGEIVQRPANALKELIENSLDAKSTNIIITVK 296
I KLSE+ N A E R LK+L+EN L+ N+I T+K
Sbjct: 261 IDKLSEQSGNVTADTNEHYDRAMQYLKQLVENILNRSLDNLIDTLK 306
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 LVDLASKLFS-ISSFNALAGLCTISPAAIRFTTSSLSFRIIPGSFIY 140
L+ L +K + SSFN + +CTI I SS S GS+I+
Sbjct: 187 LIVLPTKFLARFSSFNVVFQICTILIFIISLAASSTSETRNTGSYIF 233
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 225 ANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTGIRNEDLDIVC 371
ANA E I ++L+A S I GGL + ++ + G + + ++C
Sbjct: 1323 ANATDEEIWHALEAASLKQFIQTLDGGL-YSRVTEGGANLSSGQRQLMC 1370
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 189 NRIAAGEIVQRPANALKELIENSLDAKSTNIIITV 293
+RI E++Q P L ++I + KST +II V
Sbjct: 99 SRIRPKELLQEPQTTLPDIISTVNNDKSTCLIIQV 133
>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 174 SEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGG 305
S E NR A E+V+ A + LI DAKS ++ V G
Sbjct: 208 SGECKNRKYAEEVVRECNEAWERLITGKTDAKSDFSLVNVSVTG 251
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 334 GQV*EMKT*ISYVRDSQHLNSENMRTYKKSVPTDFVERLSRVSVILHTLQ 483
GQ+ + K +RD+Q E +R Y++ + T+ +RLS + L L+
Sbjct: 806 GQLQDAKNEEHRIRDNQRPVIEEIRIYREKIQTE-TQRLSSLQTELSRLR 854
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 150 EPGIIRKLSEEVVNRIAAGEIVQRPANALKEL 245
EP ++RK+++E V A E+V NA++E+
Sbjct: 395 EP-LVRKIADEFVTSGVANEVVCAGINAIREV 425
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 49 FMSNNYKNIVNFQIDGPKRKV*PKFNKFQP 138
F+S Y+N+ NF + + KF+K +P
Sbjct: 37 FLSKIYENVSNFNVPRKLHDIEHKFSKEEP 66
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.3
Identities = 26/118 (22%), Positives = 50/118 (42%)
Frame = +3
Query: 129 ISAL*MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGL 308
I+ L M + ++ L EE+ N A ++ + + +E + SL TN+ +
Sbjct: 597 ITFLSMKQKMQLKSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEK 656
Query: 309 KFLQIQDNGTGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLT 482
++ DN + DL I + +T S ++ E+ ++ G E I + LT
Sbjct: 657 YHEELLDNQQKL--YDLRIELD-YTKSNCKQMEEEMQVLREGHESEIKDFIEEHSKLT 711
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 306 LKFLQIQDNGTGIRNEDLDIVCERFTTSKLRK 401
++ ++ N +G N+ VCERF S LRK
Sbjct: 923 IELVEAYINKSGDINDLFGAVCERFPDSDLRK 954
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -2
Query: 630 LYVPQRYKINLQRLSECRCCQHKLLWGLSVFHFHMRLCKHICLVQF 493
+Y Q K+N Q+ C H ++G ++ +L KH + +
Sbjct: 850 IYQEQLDKLNFQKYLNESKCSHSPIYGSNLIRLAEKLPKHSTSIDY 895
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,606
Number of Sequences: 5004
Number of extensions: 52691
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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