Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f10f
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 196 1e-50
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 89 4e-18
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680... 67 1e-11
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 28 5.5
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 28 7.2
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 27 9.6
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 196 bits (478), Expect = 1e-50
Identities = 93/164 (56%), Positives = 123/164 (75%)
Frame = +3
Query: 150 EPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQD 329
EP IR+L E VVNRIAAGE++QRP++A+KELIENSLDA ++++ + VK GGLK +Q+ D
Sbjct: 14 EPPRIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKLIQVSD 73
Query: 330 NGTGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQDK 509
+G GIR EDL I+CER TTSKL YEDLQ I + GFRGEALAS++++ H+T+ T T
Sbjct: 74 DGHGIRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQL 133
Query: 510 CAYKASYENGKLKGPIKACAGNNGTQITVEDLFYNVVARKGALR 641
Y+ SY +G ++ K CA GTQ+ VE+LFYN+VARK L+
Sbjct: 134 HGYRVSYRDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQ 177
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 88.6 bits (210), Expect = 4e-18
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Frame = +3
Query: 162 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 341
IR + + V+RI +G+++ ++A+KEL+ENSLDA +T + +T++S G + DNGTG
Sbjct: 9 IRPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRSYGEDSFTVADNGTG 68
Query: 342 IRNEDL-----------------DIVCERFT------TSKLRKYEDLQEISTYGFRGEAL 452
I + D+V +R TSK+ + DL ++T+GFRGEAL
Sbjct: 69 ISPTNFQARIPPLLLSHLLLRSRDLVADRHALALKHHTSKISDFGDLASVATFGFRGEAL 128
Query: 453 ASISHIAHLTILTKTAQDKCAYKASYENGKLKGPIKACAGNNGTQITVEDLFYNVVAR 626
+S+ + LT+ T+T + + + + + + A GT +TVE LF + R
Sbjct: 129 SSLCALGKLTVETRTKDEPVGTRLEFAHSGVVTGERKMARPVGTAVTVEKLFSTLPVR 186
>09_06_0205 -
21567467-21567655,21567791-21567876,21567965-21568037,
21568267-21568326,21568887-21568935,21569328-21569431,
21569587-21569640,21569719-21569763,21569817-21569879,
21570415-21570615,21570620-21570797,21570900-21570993,
21571075-21572478,21572560-21572604,21572710-21572788,
21573424-21573589,21573679-21573771,21573872-21573929,
21574063-21574120,21574210-21574367,21575130-21575177,
21575269-21575320,21575404-21575529
Length = 1160
Score = 67.3 bits (157), Expect = 1e-11
Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Frame = +3
Query: 162 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 341
I++L + V + + + ++ + ++EL+ NS+DA ++ I I+V + +++++D+G G
Sbjct: 4 IKRLPKSVHSSLRSSIVLFDLSRVVEELVYNSIDANASKIDISVNARAC-YVKVEDDGCG 62
Query: 342 IRNEDLDIVCERFTTSKLRKYEDLQEIS--TYGFRGEALASISHIAHLTILTKTAQDKCA 515
I ++L +V E++ TSK E S ++G GEALAS+S I+ + + TK +
Sbjct: 63 ITRDELVLVGEKYATSKFHNVMVDGEPSSRSFGLNGEALASLSDISVVEVRTKARGRPNS 122
Query: 516 YKASYENGKLKG-PIKACAGNNGTQITVEDLFYNVVARK 629
Y + K I GT + V +LFYN R+
Sbjct: 123 YCKIIKGSKCSHLGIDEQREVVGTTVIVRELFYNQPVRR 161
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 304 PPDF----TVIMMLVDLASKLFSISSFNALAGLCTISPAAIRFTTSSLSF 167
PP F ++IM++V L + + S+SS++A + L +SP + + F
Sbjct: 544 PPTFHFKTSIIMVIVSLVASVDSLSSYHATSLLVNLSPPTRGVVSRGIGF 593
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 370 HTISKSSFLIPVPLSCICKNFKPPDFTVIM 281
HT++ ++ +P + CI +NF+ D TV++
Sbjct: 502 HTLNATAVAVPRLIICILENFQQEDGTVVI 531
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 27.5 bits (58), Expect = 9.6
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 4/128 (3%)
Frame = +3
Query: 168 KLSEEVV----NRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNG 335
KLS E+V N AG++ A+ +++ E + K + T K+ GL + D
Sbjct: 487 KLSSELVKQRENTRKAGQLFMNAADTYQQVAEKQIRTKKEELANTRKA-GLLLINAADTY 545
Query: 336 TGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQDKCA 515
+ + + + E +++ + TY E + L +L + A
Sbjct: 546 QEVARKQIKTMVEDLEDARMAVLVVMNAADTYQLEAEKKIK-DKMEELRVLGVQKAEMDA 604
Query: 516 YKASYENG 539
AS E+G
Sbjct: 605 RAASLESG 612
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,593,493
Number of Sequences: 37544
Number of extensions: 294879
Number of successful extensions: 717
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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