Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f10f
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical pr...   203   1e-52
Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical p...   109   2e-24
AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical ...   109   2e-24
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    32   0.40 
AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...    31   0.53 
AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine re...    29   2.8  
AF067944-1|AAC17672.1|  237|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine re...    27   8.6  

>Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical
           protein T28A8.7 protein.
          Length = 758

 Score =  203 bits (495), Expect = 1e-52
 Identities = 90/161 (55%), Positives = 124/161 (77%)
 Frame = +3

Query: 156 GIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNG 335
           G+I++L ++VVNR+AAGE++ RP NA+KEL+ENSLDA +T I++ +++GGLK LQ+ DNG
Sbjct: 2   GLIQRLPQDVVNRMAAGEVLARPCNAIKELVENSLDAGATEIMVNMQNGGLKLLQVSDNG 61

Query: 336 TGIRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQDKCA 515
            GI  ED  +VCERF TSKL+K+EDL  + TYGFRGEALAS+SH+A + I++K A  KCA
Sbjct: 62  KGIEREDFALVCERFATSKLQKFEDLMHMKTYGFRGEALASLSHVAKVNIVSKRADAKCA 121

Query: 516 YKASYENGKLKGPIKACAGNNGTQITVEDLFYNVVARKGAL 638
           Y+A++ +GK+    K  AG NGT IT  DLFYN+  R+  +
Sbjct: 122 YQANFLDGKMTADTKPAAGKNGTCITATDLFYNLPTRRNKM 162


>Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score =  109 bits (262), Expect = 2e-24
 Identities = 53/159 (33%), Positives = 98/159 (61%)
 Frame = +3

Query: 162 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 341
           I ++S+EV  R+   ++V   ++A+++LI+NS+DA ST I I VK+ G + +++QDNG+G
Sbjct: 6   IERISKEVAERLTTAQVVVSLSSAIRQLIDNSIDAGSTIIDIRVKNNGFESIEVQDNGSG 65

Query: 342 IRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQDKCAYK 521
           I   + D +C+  +TSKL ++ D  +++T GFRGEAL ++  ++ ++I T+ +  +   +
Sbjct: 66  IEARNFDALCKPHSTSKLTQFSDFDKLATLGFRGEALNALCTVSSVSIFTRASDTEIGTR 125

Query: 522 ASYENGKLKGPIKACAGNNGTQITVEDLFYNVVARKGAL 638
            +Y++       ++ A   GT I V  LF  +  R+  L
Sbjct: 126 LTYDHSGNIICRQSAARELGTTIIVNKLFETLPVRRKEL 164


>AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score =  109 bits (262), Expect = 2e-24
 Identities = 53/159 (33%), Positives = 98/159 (61%)
 Frame = +3

Query: 162 IRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQIQDNGTG 341
           I ++S+EV  R+   ++V   ++A+++LI+NS+DA ST I I VK+ G + +++QDNG+G
Sbjct: 6   IERISKEVAERLTTAQVVVSLSSAIRQLIDNSIDAGSTIIDIRVKNNGFESIEVQDNGSG 65

Query: 342 IRNEDLDIVCERFTTSKLRKYEDLQEISTYGFRGEALASISHIAHLTILTKTAQDKCAYK 521
           I   + D +C+  +TSKL ++ D  +++T GFRGEAL ++  ++ ++I T+ +  +   +
Sbjct: 66  IEARNFDALCKPHSTSKLTQFSDFDKLATLGFRGEALNALCTVSSVSIFTRASDTEIGTR 125

Query: 522 ASYENGKLKGPIKACAGNNGTQITVEDLFYNVVARKGAL 638
            +Y++       ++ A   GT I V  LF  +  R+  L
Sbjct: 126 LTYDHSGNIICRQSAARELGTTIIVNKLFETLPVRRKEL 164


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +3

Query: 222 PANALKELIENSLDAKSTNIIIT-VKSGGLKFLQIQDNGTGIRNED 356
           P +A+ EL++N+ DA + ++ I  +     +FL+++D+G G+  E+
Sbjct: 33  PLSAIAELVDNAYDADARDLHIDFLDINNEQFLELRDDGLGMAREE 78


>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 17/92 (18%), Positives = 42/92 (45%)
 Frame = +3

Query: 144 MNEPGIIRKLSEEVVNRIAAGEIVQRPANALKELIENSLDAKSTNIIITVKSGGLKFLQI 323
           +N+P + +    +        +I     +A    IEN    +    + TV+    + ++ 
Sbjct: 92  INKPDVFKSPGSDTYIIFGEAKIEDLTQHAQMSAIENLKPTREAPQLKTVEEDENEDVEF 151

Query: 324 QDNGTGIRNEDLDIVCERFTTSKLRKYEDLQE 419
           +++ TGI  +D+++V  +  T++ +    L+E
Sbjct: 152 KEDSTGIEEKDIELVISQANTTRNKAIRALKE 183


>AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine
           receptor, class h protein23 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 593 GYLSAVVASTSFYGAFQFSIFI*GFVSTFVLCSF 492
           G+     + T  YGAF F  +  GFVSTF L +F
Sbjct: 263 GFFFGYASETIAYGAFVFITYH-GFVSTFALIAF 295


>AF067944-1|AAC17672.1|  237|Caenorhabditis elegans Hypothetical
           protein K10C9.4 protein.
          Length = 237

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -3

Query: 602 IFNGYLSAVVASTSFYGAFQFSIFI*GFVSTFVLCSFCQYCKVC 471
           IF+G+L+ +V  + ++  FQF I+I   ++  ++ ++      C
Sbjct: 21  IFSGFLAFLVLRSEWFRTFQFLIYIPPLINFIIISNWLLAVTYC 64


>AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine
           receptor, class w protein6 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 269 FGIQAVFYKFF*CISWSLHYFTSSNTV 189
           FG  A+F     C  WSL YF  +  V
Sbjct: 177 FGFLAIFITLIACTLWSLGYFVQAKVV 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,406,437
Number of Sequences: 27780
Number of extensions: 294503
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)