Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f08f
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.0  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.0  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    30   1.4  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   2.4  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   2.4  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    28   5.6  
Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical...    27   9.7  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    27   9.7  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    27   9.7  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 154 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 264
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 154 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 264
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 211 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 387
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 211 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 387
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +1

Query: 34   PKMKPVIVILCLFVASLYAADSD-VPNDILEEQLY--NSIVVADYDSAVEKSKH-LYEEK 201
            P +K V+V LC+   +LY + S     + + EQLY  +S+  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 202  KSEVITNVVNKLIRNNKMNCMEYAY 276
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +1

Query: 34   PKMKPVIVILCLFVASLYAADSD-VPNDILEEQLY--NSIVVADYDSAVEKSKH-LYEEK 201
            P +K V+V LC+   +LY + S     + + EQLY  +S+  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 202  KSEVITNVVNKLIRNNKMNCMEYAY 276
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 151 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 324
           A Y S  +K +   EEK  E I N +    R    K   +    ++ L+ S+D+ RDC  
Sbjct: 29  ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87

Query: 325 VEFRLIFA 348
           ++    FA
Sbjct: 88  IDMDAYFA 95


>Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical
           protein F44F1.3 protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 372 VHKLNGVFGEDKSELNWETITDDVLGA-LEP 283
           VHK+NG+F ++K  +  E I D      LEP
Sbjct: 419 VHKINGIFSDNKKVVACEIINDSTQDIDLEP 449


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 259 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 348
           C+ Y Y+L +     +KD+ RDCF   F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171


>Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical
           protein R07B7.13 protein.
          Length = 410

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
 Frame = +1

Query: 124 EQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNVVN-KLIRNNKMNCMEYAYQLWLQGSK 300
           ++L+NS +  +Y      S+ + + K    ++ + N KLIRN +MN     Y     GS 
Sbjct: 166 DELFNSSLPINYGDWRTLSE-IIQMKPYLKVSKIPNLKLIRN-QMNAELAGYAH--NGSL 221

Query: 301 DIVRDCFPVEF-RLIFAENAIKL----MYKRDGLALTLSNDVHGNDGRLAFGDGKDKTSP 465
            +V     ++F   I  E AIKL    ++    L+ +  +    N   L F DG     P
Sbjct: 222 AMVEYAKMLDFFPKISKETAIKLVKHGLFMCGSLSFSRRSIQKYNSDILRFTDGSVAGKP 281

Query: 466 KVSWKFIALWENNKVYFKILNT 531
           K +W  + L ++ ++  K L++
Sbjct: 282 KTNWNGVML-DHRRIAQKTLHS 302


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 254 ILLFRISLFTTFVMTSLFFSSYK 186
           I LF +S FTT  +  L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228


>AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17d protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 378 ALVHKLNGVFGEDKSELNWETITD 307
           AL+H+  G + E K + NWE   D
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 378 ALVHKLNGVFGEDKSELNWETITD 307
           AL+H+  G + E K + NWE   D
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 378 ALVHKLNGVFGEDKSELNWETITD 307
           AL+H+  G + E K + NWE   D
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 378 ALVHKLNGVFGEDKSELNWETITD 307
           AL+H+  G + E K + NWE   D
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,465
Number of Sequences: 27780
Number of extensions: 234582
Number of successful extensions: 920
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)