Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f07r
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016684-6|AAB66210.1|  272|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF016433-2|AAB65389.1|  336|Caenorhabditis elegans Seven tm rece...    28   8.1  

>AF016684-6|AAB66210.1|  272|Caenorhabditis elegans Hypothetical
           protein F45C12.12 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 397 IWHGSVYVKKLITIKNLFGLALSLRNIT 480
           +WH  + ++KLI + N FG+   L+  T
Sbjct: 229 LWHSDIEIEKLILMANTFGMKDLLKECT 256


>AF016433-2|AAB65389.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 143 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 294 CVIVELICFLTILFVNWKI-VWLK*ARTFN*IEAANEFINESLLIKLLF 151
           C++V + CF TIL+  +KI + LK A+    +      +N  L I L F
Sbjct: 208 CILVMVACFSTILYCAFKIYIRLKSAQAL--MSTKTRELNRQLFITLTF 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,797
Number of Sequences: 27780
Number of extensions: 267712
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)