Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f07f
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.56 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.7  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   3.0  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   5.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.9  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   6.9  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   6.9  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   9.1  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    21   9.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 237  DYGLFQINDRYWCSKGASPGK 299
            DY     +  YW  KGA PGK
Sbjct: 2538 DYFNANFSLNYWIEKGADPGK 2558


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 126 LRKHGFEEN-LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQ 254
           L K     N  +R ++C  E E+    SK   N  G+K   L++
Sbjct: 320 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYK 363


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 126 LRKHGFEEN-LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQ 254
           L K     N  +R ++C  E E+    SK   N  G+K   L++
Sbjct: 212 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYK 255


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 102 TRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTS 206
           TR  L H    H      +  W+ +V  ES  DTS
Sbjct: 248 TRLFLTHRKPFHPASTQSLSRWIKMVLAESGVDTS 282


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 181 STRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQ 74
           S   T  L R   +  +LS+  R HL +++   PTQ
Sbjct: 48  SKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQ 83


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 144 RSHVSSAHARDRIS*TFWLQNQRRGQPKR 58
           R  ++SA   +      W QN+R  Q KR
Sbjct: 283 RIEIASALQLNETQVKIWFQNRRMKQKKR 311


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 144 RSHVSSAHARDRIS*TFWLQNQRRGQPKR 58
           R  ++SA   +      W QN+R  Q KR
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKR 100


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 144 RSHVSSAHARDRIS*TFWLQNQRRGQPKR 58
           R  ++SA   +      W QN+R  Q KR
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKR 100


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 264 RYWCSKGASPGK 299
           R W  +GA PGK
Sbjct: 248 RGWIERGADPGK 259


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 411 NHCQGSLPDISSC*IP 458
           NH QGS P+I S   P
Sbjct: 77  NHIQGSKPNILSSAFP 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,673
Number of Sequences: 336
Number of extensions: 2798
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)