Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f07f
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   2.6  
SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                29   4.5  
SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    29   4.5  
SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)                       28   6.0  
SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)                    28   7.9  

>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 138 GFEENLMRNWVCLVEHESSRDTSKTN 215
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 449 AAANIRQRALAVVLPTVPGIEAVTFVNFLSAFRCLSDV-VSQEVGALN 309
           A  N+++RAL +  P +  +  ++ V+ LS    LSDV V  +V  L+
Sbjct: 90  ALENVQRRALKIAFPVLSDVSVLSDVSVLSDVSVLSDVSVLSDVSVLS 137


>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -3

Query: 428 RALAVVLPTVPGIEAVTFVNFLSAFRCLSDVVSQEVGALNV---AVFAWTGAFAAPVPVV 258
           RAL V+   + G +A+T  NF+S   C       +   LN+   AV   TG  A PV  V
Sbjct: 285 RALMVLHSRITGEDALTLTNFISFKACCHAHSGDDEVILNLHFGAVTMETGILAIPVTPV 344

Query: 257 DL 252
            +
Sbjct: 345 PI 346


>SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +3

Query: 135 HGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNVK 314
           H  +   +++W+  +  E  RDT+      N      + ++N+  W  K     K  +VK
Sbjct: 53  HEADPVAVKSWLKKLSEEQFRDTADKYLRPNNCSHVVVPKVNEEIW-GKLTRQVKTKDVK 111

Query: 315 CSDLLTDDITKAAKCAKK 368
            S L T +ITKA   A K
Sbjct: 112 FSRLQT-NITKAGHIAVK 128


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 131 ETWLRRKSHEELGMSGRAREQP*HIQDEHEP 223
           E WL RK H E  +S   RE+   ++++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)
          Length = 246

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 66  VVLCVGSEAKTFTRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYG 245
           VV   G  + + +   +   L++ GF  +L  + V  +   +S    K    RNG K   
Sbjct: 41  VVKVTGGRSNSSSHEDVAQSLKRSGFLYDLTESSV--IPTATSATYRKFRLKRNGMKKTE 98

Query: 246 LFQINDRYWCS 278
            F+   R WCS
Sbjct: 99  FFKYLRRKWCS 109


>SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)
          Length = 501

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 177 VEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNVKCSDLLTDDI 341
           V H+ S++ S+TN  RNG        +  +    K +   +DC V   DL T ++
Sbjct: 342 VTHKPSKERSRTNRARNGHAQTERETVTHKP-SEKRSRTNRDCGVGRDDLTTIEL 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,541,572
Number of Sequences: 59808
Number of extensions: 366480
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)