Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f06r
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.13
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 31 0.13
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 29 0.67
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.89
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.89
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 2.7
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 3.6
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 3.6
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ... 27 3.6
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 8.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.13
Identities = 35/165 (21%), Positives = 72/165 (43%)
Frame = -1
Query: 702 SSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINFGSRAPRT 523
S++TI+SS+P+T+ + + T +S + TT T ST + + S P T
Sbjct: 512 SNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STSVPYTS-TPVT 569
Query: 522 SSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQARESAGS* 343
SS S+ ++S + CT++T ++++ +T P +T+ + +
Sbjct: 570 SSNYTISSSTPVTSTPVTTTNCTTST------SVLYTSTPITSPNSTSSSSTQVSWNSTT 623
Query: 342 SLCGXXXXXXXXXXTLNVTNTWYWESALTGTATIWPSESTASIVS 208
+ G ++ +T+T + T + +I S S+ + S
Sbjct: 624 PITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSS 668
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 31.5 bits (68), Expect = 0.13
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = -3
Query: 709 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 542
L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
Query: 541 LQGSKD 524
+ K+
Sbjct: 170 SKYIKE 175
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 358 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 248
+ +K I L++NN+ KILN R V+ VGT NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.89
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 455 VHKLNRVFGEDKSELNWETIPDDVL 529
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 0.89
Identities = 37/129 (28%), Positives = 55/129 (42%)
Frame = -1
Query: 723 SLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINF 544
SLT+ +S ++ASSS T+ L +SI + + S S TT + S+ N
Sbjct: 108 SLTSSSATSSSLASSST-TSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNS 166
Query: 543 GSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQA 364
+ A TSS S LSS +S S S++++ AT + L + A
Sbjct: 167 TTSATPTSSATSSSLSSTAASNSATSSSLASSSLNS---TTSATATSSSLSSTAASNSAT 223
Query: 363 RESAGS*SL 337
S S SL
Sbjct: 224 SSSLASSSL 232
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 700 QLYNSVVVADYDSAVEKSKHLYEEKKS 620
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 540 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 439
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 373 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 257
K SP+V+WK +W + K K +++ +LG G++
Sbjct: 28 KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 510 VSQLSSDLSSPKTRLSLCTSATV 442
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 628 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 536
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 115 RTVEPSGHRMAWGYNGRVIGSPEHYAWGIKAF 20
+T+ P G +GY + P HY + I F
Sbjct: 2 KTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCF 33
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 282 TWYWESALTGTATIWPSESTASIVS 208
T Y+ + G ATI PS TASI+S
Sbjct: 1217 TLYYTTLGIGIATISPSIGTASIIS 1241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,317
Number of Sequences: 5004
Number of extensions: 50562
Number of successful extensions: 213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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