Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f05r
(732 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 3.9
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 5.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.8
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 21 9.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 9.0
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 9.0
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 9.0
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.6 bits (46), Expect = 3.9
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = -2
Query: 437 IVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXL--IQEIDT 264
++ +D + + + F YD+ NG + L + I DT
Sbjct: 226 LMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDT 285
Query: 263 DGSGTVDFDEF 231
DG G ++ +EF
Sbjct: 286 DGDGKLNVNEF 296
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.2 bits (45), Expect = 5.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = -3
Query: 391 RSDCTTRKATVTFPRRACARSSGNWT 314
+S CT F ++ C G+WT
Sbjct: 148 QSSCTIDVTYFPFDQQTCIMKFGSWT 173
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 674 CPEPWXDVT 700
CPEP+ DVT
Sbjct: 177 CPEPYVDVT 185
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 674 CPEPWXDVT 700
CPEP+ DVT
Sbjct: 177 CPEPYVDVT 185
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 674 CPEPWXDVT 700
CPEP+ DVT
Sbjct: 177 CPEPYVDVT 185
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 674 CPEPWXDVT 700
CPEP+ DVT
Sbjct: 177 CPEPYVDVT 185
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 674 CPEPWXDVT 700
CPEP+ DVT
Sbjct: 177 CPEPYVDVT 185
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 674 CPEPWXDVT 700
CPEP+ DVT
Sbjct: 177 CPEPYVDVT 185
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 674 CPEPWXDVT 700
CPEP+ DVT
Sbjct: 245 CPEPYVDVT 253
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 674 CPEPWXDVT 700
CPEP+ DVT
Sbjct: 245 CPEPYVDVT 253
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.0
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 674 CPEPWXDVT 700
CPEP+ D+T
Sbjct: 196 CPEPYPDIT 204
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 9.0
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 674 CPEPWXDVT 700
CPEP+ D+T
Sbjct: 214 CPEPYIDIT 222
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +1
Query: 13 TPDQLRTINYSLYNTYIILEKLADRY 90
+PD+ + Y LYN +I + + +Y
Sbjct: 417 SPDRTSPMEYRLYNPALIQSQPSPQY 442
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.4 bits (43), Expect = 9.0
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 295 NSMASSKRSTLTEAAPSTSTS 233
NS ASS R A STSTS
Sbjct: 821 NSPASSPRYLSAAATSSTSTS 841
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,348
Number of Sequences: 438
Number of extensions: 3268
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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