Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f03r
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.1  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   5.4  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   5.4  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   7.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.4  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 575 LVHQSCCNAIESAHRVHCS 631
           L +   C  I ++HR HCS
Sbjct: 155 LCNNGTCEDIGNSHRCHCS 173


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -2

Query: 85  CCKTCP--LSEIDIFTLII 35
           CCKTCP  L + DI   I+
Sbjct: 104 CCKTCPGDLYDSDIIQDIV 122


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 625 MDSMSRLN---RIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQK 497
           +DS S +    + A  L H +N H +++    GL  HA  L S ++
Sbjct: 381 VDSCSNIQTGEQFARLLRHNFNRHLNSNRAPLGLHFHASWLKSKKE 426


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 625 MDSMSRLN---RIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQK 497
           +DS S +    + A  L H +N H +++    GL  HA  L S ++
Sbjct: 388 VDSCSNIQTGEQFARLLRHNFNRHLNSNRAPLGLHFHASWLKSKKE 433


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 157 LKFYFDSKIYNFINVKAINNFFF 89
           L F  D K+   I    +NNF+F
Sbjct: 277 LCFLLDEKLSYIILTSFLNNFYF 299


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 148 YFDSKIYNFINVKAINNF 95
           YF +K Y+F N+   N+F
Sbjct: 570 YFANKTYDFHNMSFENDF 587


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,865
Number of Sequences: 336
Number of extensions: 3599
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)