Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f03r
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    29   0.47 
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    27   2.5  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    27   3.3  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   5.8  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    25   7.7  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.7  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = -2

Query: 652 DVRKAYHRAMDSMSRLNRIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIH 473
           D  KA  R  +  + + +   R + K NA       G    GH   L S    + SF +H
Sbjct: 751 DCGKAKERVYNEKTSVQKFEVRWISKANADQRAGRAGRTGPGHCYRLYSSAVFDSSFPLH 810

Query: 472 NLPVIAK 452
           +LP I +
Sbjct: 811 SLPEILR 817


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 370 LEVHQMSLERVLVAIETCSHKLSL--LLPSWQLQADYGLQMILHSF 501
           +  H++S+++   A++  S K+    +L +W+L    G+  IL+SF
Sbjct: 416 IAAHRISVKKAAAALKASSVKIQGRDILATWKLLVALGMTPILYSF 461


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 191 YFSISHLLLIFSRHFNDSRFINNAGCAVTLLHNTNDPSLI 310
           Y   SHLL   S  FN  +F  +  C     +  NDP ++
Sbjct: 263 YSKESHLLQHGSHSFNGKQFETSFNCLTPSENTVNDPQVL 302


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 468 CL*LPRWQQ*RKLVGTCFNCYKDTL-QRHLVDF*SVCHENRLLRTVKILRNKKDIRL 301
           CL L  +++   +V   ++C++D + Q  LV+F SVC     +  + +  N+  + L
Sbjct: 210 CLQLQMFRKMHNIVRP-WDCFQDDIPQTWLVEFSSVCQAAESISLIAVNNNRPPVEL 265


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -2

Query: 673 KLVVSEEDVR-----KAYHRAMDSMSRLNRIAARLMHKYNAHGSTDV 548
           KL+V   D+      KAY+R  D + RLN IA+  ++ Y+   ST V
Sbjct: 28  KLIVEASDMTAFRQSKAYYRIFDFLQRLN-IASVGVNDYHVEYSTRV 73


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 20  NTSHLNNEGKNIDF-R*WTSFATKKKEVIYCFNINKIIY 133
           NT +LN     +DF   +T F  + K+++  FNI K+IY
Sbjct: 123 NTVYLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIY 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,104
Number of Sequences: 5004
Number of extensions: 55757
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)