Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f03r
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 32 0.37
08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701 31 0.85
07_01_0123 - 927691-929223,930050-930268 29 2.6
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 29 3.4
04_01_0452 - 5859262-5859465,5859618-5859661,5859753-5859954,586... 29 4.5
04_04_1085 - 30719921-30719960,30720206-30720351,30720469-307205... 28 6.0
07_03_1649 - 28385289-28385358,28387039-28387877 28 7.9
05_03_0052 + 7827973-7828031,7829012-7829139,7829243-7829305,783... 28 7.9
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 32.3 bits (70), Expect = 0.37
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = -2
Query: 550 VTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHAPETSGGLL 371
+ G L HA L KN+V + I++ AAV +A +LL+GH + S
Sbjct: 578 LAGKTLPSHAAILCGLVKNQVYSDLEVAFAISEDAAVYRALSQTIELLEGHTSQISQHYY 637
Query: 370 ICLPREQAAAYCKDIEKQE 314
CL E A D Q+
Sbjct: 638 GCLFHELLAFQIADRHPQQ 656
>08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701
Length = 204
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 439 AKACGNMFQLLQGHAPETSGGLLICLPREQAAA-YCKDIEKQEGYQAWIIGIV 284
A + G+ FQ LQG AP S AAA C D ++E + W + +V
Sbjct: 31 AASAGSFFQQLQGPAPAVSSSPSTTTATAPAAAGSCDDGGEEEEEEVWTVDVV 83
>07_01_0123 - 927691-929223,930050-930268
Length = 583
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 333 KILRNKKDIRLGSLVLWRRVTAQPALLINLE 241
+I R ++ RLG + WRR+TA LL++++
Sbjct: 43 RIWRRRRQRRLGFFLQWRRLTATFCLLLSIQ 73
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 29.1 bits (62), Expect = 3.4
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +2
Query: 194 FSISHLLLIFSRHFNDSRFINNAGCAVTLLHNTNDPSLISFLFLNI-----FTVRSSLFS 358
+++ H+ R+F S F + L TN+ +L S L N F + SLFS
Sbjct: 230 WALDHVARFLRRNFARSSFYRSYLEEPCLWVETNNTTL-SLLSSNAEIALGFLLIISLFS 288
Query: 359 WQTD*KSTRCLWSVSL*QLKHVPTSFRY 442
WQ T W V L Q+ H P + Y
Sbjct: 289 WQRSIIQTFMYWQV-LKQMYHAPVTASY 315
>04_01_0452 -
5859262-5859465,5859618-5859661,5859753-5859954,
5860905-5860949
Length = 164
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 363 CHENRLLRTVKILRNKKDIRLGSLVLWRRVTAQPALLIN 247
C + +L +L+NKK RL +LVL R ++ IN
Sbjct: 21 CGDENMLAMFNVLKNKKSARLENLVLARNSFSRTVYNIN 59
>04_04_1085 -
30719921-30719960,30720206-30720351,30720469-30720546,
30720649-30720715,30720948-30721090,30721504-30721535,
30721769-30722168,30722540-30722601,30722716-30722892,
30723078-30723201,30723590-30723760
Length = 479
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 576 STMLTAQQM*LVLVYWVMHRTWHLIKRMKYH 484
S+M+ Q+ L+++ ++R W +IK KYH
Sbjct: 448 SSMVLNHQVALIVLMEQLYRAWTIIKGQKYH 478
>07_03_1649 - 28385289-28385358,28387039-28387877
Length = 302
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -2
Query: 586 LMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLL 407
LM + AHG + L A L + +++ V+H + +AAVA + L+
Sbjct: 12 LMFPWLAHGHINP----YLELATRLTTTSSSQIDVVVHLVSTPVNLAAVAHRRTDRISLV 67
Query: 406 QGHAPETSG 380
+ H PE G
Sbjct: 68 ELHLPELPG 76
>05_03_0052 +
7827973-7828031,7829012-7829139,7829243-7829305,
7830323-7830444,7830557-7830672,7830760-7831567,
7831800-7832528,7832638-7832859,7833089-7833184,
7833273-7833467,7834303-7834416,7835368-7835651,
7836216-7836293,7836326-7836449,7836739-7836786
Length = 1061
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -2
Query: 490 VSFVIHNLPVIAKMAAVAKACGNMFQLLQGHAPETSGGLLICLPREQAAAYCKDIEKQE 314
V LP+ +VA N+F+ L+GH + G L++ E AA ++ E
Sbjct: 404 VDVTTSELPIEKDGVSVANVEHNLFEWLKGHMLKLKGTLMLANADELAAIQAMRLKSSE 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,864,640
Number of Sequences: 37544
Number of extensions: 341415
Number of successful extensions: 925
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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