Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f03r
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical ...   126   1e-29
U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical pr...    27   9.4  
L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical
           protein Y45F10A.4 protein.
          Length = 378

 Score =  126 bits (305), Expect = 1e-29
 Identities = 69/149 (46%), Positives = 90/149 (60%), Gaps = 7/149 (4%)
 Frame = -2

Query: 649 VRKAYHRAMDSMSRLNRIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHN 470
           + KA+ +  + MSRLNR AA+L+HKY+AH STDVTGFGLLGHA+NLA  QK  + F+I  
Sbjct: 228 IEKAFKQVCEQMSRLNRNAAKLLHKYDAHSSTDVTGFGLLGHAENLARVQKQPMEFIIEK 287

Query: 469 LPVIAKMAAVAKAC----GNMFQLLQGHAPETSGGLLICLPREQAAAYCKDIEKQEGYQA 302
           LP+I  M  +A       G  F+L QG + ETSGGLLI +  E A  Y  ++   +   A
Sbjct: 288 LPIIEYMDEIADKMIAKGGEGFKLYQGTSAETSGGLLIAMSEENAKKYIAELSSLDNAPA 347

Query: 301 WIIGIV---EKGNRTARIIDKPRVIEVPA 224
           WIIG V      +  ARI+     I VP+
Sbjct: 348 WIIGKVTAKTTDSSIARILPDAVRISVPS 376


>U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical
           protein B0507.7 protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -2

Query: 625 MDSMSRLNRIAARLMHKYNAHGSTDVTGF-GLLGHAQNLASHQKNEVSFVIHNLPVIAKM 449
           MD +    R+  +   ++NA GSTDV  F  L+G         + E+S +I  L +  + 
Sbjct: 253 MDDLLSALRVFYQHATEFNADGSTDVQVFTQLIGEVIGTVEELRTEMSELISTLEMFEEE 312

Query: 448 AAVAKACG 425
              A   G
Sbjct: 313 GCTATEQG 320


>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 24/81 (29%), Positives = 38/81 (46%)
 Frame = -1

Query: 593 SKIDAQVQCSRLNRCNWFWFTGSCTELGISSKE*SIICNP*SACNCQDGSSSESLWEHVS 414
           S   A    SR +R    W   S T L  SS   S++ +P ++ +  + SSSE+    +S
Sbjct: 448 SSFSANYYSSRFSR----WKHNSETGLNPSS---SLLVDPFASGDFHEASSSEASSTPLS 500

Query: 413 IATRTRSRDIWWTSNLSATRT 351
            A RT+S +  W   L   ++
Sbjct: 501 PARRTKSEEAIWKPVLHTVKS 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,032,559
Number of Sequences: 27780
Number of extensions: 314617
Number of successful extensions: 916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)