Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f03r
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   6.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   8.3  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   8.3  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 485 ICNP*SACNCQDGSSSES 432
           +  P +  NC  GSSS+S
Sbjct: 9   LATPRTGTNCSSGSSSDS 26


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 626 CSVICFTNVFFRYN 667
           CSVI   N++ R+N
Sbjct: 104 CSVISDANIYIRFN 117


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 626 CSVICFTNVFFRYN 667
           CSVI   N++ R+N
Sbjct: 104 CSVISDANIYIRFN 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,798
Number of Sequences: 438
Number of extensions: 3616
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)