Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f03f
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   2.4  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   3.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    22   5.1  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   5.5  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.3  

>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 496 VLSDLYAMGVTECDNMLMLLGVSTKMTEKERDVVIPLIMRGFKDSAL 636
           +L+D+Y   +  C N L LL ++ K  + E   ++      F  S+L
Sbjct: 581 LLTDIYNSDIRSCINSLQLLSLNNKRIDSETIKLLQPKSNSFSTSSL 627


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 247 DLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFM 348
           ++K    K  QD   KLV  LQ   +  D+DQFM
Sbjct: 271 EVKQSDSKKLQDEYQKLVRGLQDANAANDEDQFM 304


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 22.2 bits (45), Expect(2) = 5.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 460  DPYMMGKIACANVLSDLYAMGVTECDNMLMLLGVSTKMTEKE 585
            DPY+M  +   + LS +Y    T      + L +ST + +K+
Sbjct: 1167 DPYLMLNLILKHYLSMIYLQFRTYVSFSSLPLHISTVLYQKQ 1208



 Score = 21.8 bits (44), Expect(2) = 5.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 220  ASFRLTRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQ 342
            +S  L+  A ++  +  VP D   K+   L + Y   D+D+
Sbjct: 1110 SSHELSLVAFIREMAMPVPNDEFKKISTILARGYLALDEDE 1150


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -2

Query: 612 HYKRNNDVAF-LFSHFR*DTQQHEHIVALR-NTHRV*VAKNIGTCNLTHHIWVIH*WVKK 439
           ++  N D A  L    R   Q++E    L+ NTH   + K  G     HH WV H W  K
Sbjct: 544 YWPDNKDHALCLEGGLRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHHFWV-HTWFDK 602


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 535 DNMLMLLGVSTKMTEKERDVVIP 603
           D ML ++  STK+ +K  D++IP
Sbjct: 312 DRMLEIIPSSTKVLDKASDILIP 334


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
 Frame = -3

Query: 611  IIRGITTSRSFSVIFVETPNNMSILSHSVTPI-AYRSLRTLAHAILPIIYGSSTNG*KKS 435
            ++   T   S SV+   TP   S + ++ TPI +  +L T        +  SST     +
Sbjct: 2333 VVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSST 2392

Query: 434  VV*TKQSPPCLSGVTEQSKPMPMRGIATCINWS*SACE*SCCKDSTSFPRTS 279
            VV T  +P   S V   S P+     +T +N S S    S    ST    +S
Sbjct: 2393 VVNT-STPITSSSVLNSSTPITS---STVVNTSTSITSSSVLNSSTPITSSS 2440



 Score = 25.4 bits (53), Expect = 7.3
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
 Frame = -3

Query: 611  IIRGITTSRSFSVIFVETPNNMSILSHSVTPI-AYRSLRTLAHAILPIIYGSSTNG*KKS 435
            I+   T   S S++   TP   S + +S TPI +  +L T        +  SST     S
Sbjct: 3125 ILNSSTPITSSSILNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSS 3184

Query: 434  VV*TKQSPPCLSGVTEQSKPMPMRGIATCINWS*SACE*SCCKDSTSFPRTS 279
            +V    +P   S V   S P+     +T +N S      S    ST+   +S
Sbjct: 3185 IV-NSSTPITSSSVLNSSTPITS---STTLNTSTPITSSSVLNSSTAITSSS 3232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,720
Number of Sequences: 5004
Number of extensions: 56832
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)