Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f03f
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    29   4.3  
03_02_0164 - 6066744-6067637                                           28   7.5  
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    27   9.9  
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730...    27   9.9  
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782...    27   9.9  

>03_02_0199 -
           6347980-6348225,6348300-6348341,6348824-6348978,
           6349369-6349475,6349608-6349733,6349809-6349890,
           6350057-6350130,6351184-6352631,6353391-6353540,
           6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -3

Query: 272 TLQLLPFRSANRVSRKLASKSCATGSNGRRKAIELGLPAISN*AAAKESCATLV**DILH 93
           +LQLLP      +SR   +K        + + ++LG   + + ++  E+C  +V   ++ 
Sbjct: 193 SLQLLPAVETLDLSRNQFAKVDNLRKCTKLRNLDLGFNHLRSISSLSEACGRIV--QLVL 250

Query: 92  QNNDIYVFRGFKGLK-MWELD 33
           +NN +    G K LK + +LD
Sbjct: 251 RNNALTTLHGIKNLKSLMDLD 271


>03_02_0164 - 6066744-6067637
          Length = 297

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 354 GYPAHRHRLGLLGDT 398
           GYP H HR GL G T
Sbjct: 160 GYPQHHHRFGLAGPT 174


>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +1

Query: 199 PVAHDLEASFRLTRFAD---LKGRSCKVPQDVLGKLVESLQQDYSQADQDQFMHVAIPRI 369
           P+   LEASFRL++  D   ++G       + L  +VES+     +  QD  +  +  R 
Sbjct: 364 PLPSSLEASFRLSQEYDEEKVRGPPVDANHEQLSSVVESINDTLIEKKQDTSVEESKRR- 422

Query: 370 GIGLDCSVTPLRHGGLCLVQTTDF-FYPLV 456
                CS++ +  G + L  +  F F P +
Sbjct: 423 -KAAVCSISSVCVGVVVLTTSASFTFLPFL 451


>08_02_1476 -
           27372288-27372310,27372508-27372586,27372818-27373085,
           27373346-27373410,27373611-27373757
          Length = 193

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 1/137 (0%)
 Frame = +1

Query: 40  SHILRPLK-PRKT*ISLFWCNMSYQTSVAQDSLAAAQLEMAGNPNSIALRRPFDPVAHDL 216
           S+IL+ LK    T     WC  S +  V +D   A Q E      SI+L     P     
Sbjct: 56  SYILQILKLDGVTRTRYLWCR-SARRDVREDQRHAEQQEEEPG-RSISLSCDQTPAIMQR 113

Query: 217 EASFRLTRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFMHVAIPRIGIGLDCSVT 396
           +   R  R A L G     P    G+L ++L  +YS  +Q Q +      + +    S  
Sbjct: 114 KEQQRRARDAQLVG-----PSTQPGRLSKTLMSEYSNTEQIQVIEFCYSGVQVTYLGSSV 168

Query: 397 PLRHGGLCLVQTTDFFY 447
            L      ++ TT++ +
Sbjct: 169 RLDTDAYIVIFTTNYSF 185


>07_01_0929 +
           7818973-7820019,7820092-7820328,7820455-7820541,
           7820785-7820919
          Length = 501

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 614 RIIRGITTSRSFSVIFVETPNNMSILSHSVTPIAYRSLRTL 492
           R +R    +  F  I V TP+++ ILS S  P A R L  L
Sbjct: 140 RTLRAALVAAGFRRIRVSTPHSLGILSVSSPPSASRFLDVL 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,194,423
Number of Sequences: 37544
Number of extensions: 381303
Number of successful extensions: 802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)