Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f03f
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)             160   1e-39
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 29   4.4  
SB_15412| Best HMM Match : zf-CCHC (HMM E-Value=0.22)                  28   5.8  

>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score =  160 bits (388), Expect = 1e-39
 Identities = 75/96 (78%), Positives = 83/96 (86%)
 Frame = +1

Query: 367 IGIGLDCSVTPLRHGGLCLVQTTDFFYPLVDDPYMMGKIACANVLSDLYAMGVTECDNML 546
           IGIGLD  V P RH G+ LVQTTDFFYPLV+DPY+ GKIACANVLSDLYAMGVTECDNML
Sbjct: 311 IGIGLDSCVLPTRHKGISLVQTTDFFYPLVNDPYVQGKIACANVLSDLYAMGVTECDNML 370

Query: 547 MLLGVSTKMTEKERDVVIPLIMRGFKDSALEAGTSV 654
           MLLGVS +MT KER+VV PL++ GF D ALEAGT+V
Sbjct: 371 MLLGVSNQMTLKEREVVTPLVISGFNDLALEAGTTV 406


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 454 VDDPYMMGKIACANVLSDLYAMGVTEC---DNMLMLLGV 561
           VDDP ++G + C +V   L   G  +C   D+ L++ GV
Sbjct: 174 VDDPLLVGYVDCYDVNDPLLVEGYVDCYNVDDPLLIKGV 212


>SB_15412| Best HMM Match : zf-CCHC (HMM E-Value=0.22)
          Length = 542

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 82  SLFWC-NMSYQTSVAQDSLAAAQLEMAGNPNSIALRRPFDP 201
           S FWC    Y+T   +D LAA  + +  N   I  + P  P
Sbjct: 245 SKFWCPGCEYETEDVKDELAAVLISVHSNGTHITNQTPSTP 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,067,951
Number of Sequences: 59808
Number of extensions: 433788
Number of successful extensions: 1067
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)