Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f03f
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021488-2|CAA16367.2| 378|Caenorhabditis elegans Hypothetical ... 180 8e-46
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 32 0.41
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 30 1.7
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 30 1.7
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 30 1.7
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 30 1.7
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 30 1.7
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 30 1.7
AF106573-7|AAC78158.1| 838|Caenorhabditis elegans Hypothetical ... 28 6.7
>AL021488-2|CAA16367.2| 378|Caenorhabditis elegans Hypothetical
protein Y45F10A.4 protein.
Length = 378
Score = 180 bits (438), Expect = 8e-46
Identities = 86/154 (55%), Positives = 115/154 (74%)
Frame = +1
Query: 193 FDPVAHDLEASFRLTRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFMHVAIPRIG 372
FDPV++ L+ F LT+ +KG CKVP++VL +L+++ + D + D+ +
Sbjct: 11 FDPVSNGLDEDFVLTKLTGMKGCGCKVPRNVLLQLLQTFKTDLV-INNDE--------VD 61
Query: 373 IGLDCSVTPLRHGGLCLVQTTDFFYPLVDDPYMMGKIACANVLSDLYAMGVTECDNMLML 552
IGLD V PLRH GL LVQTTDFFYPL+DDPY+MG++ CANVLSDLYAMGV+ECDNMLML
Sbjct: 62 IGLDSCVIPLRHPGLRLVQTTDFFYPLIDDPYIMGRVTCANVLSDLYAMGVSECDNMLML 121
Query: 553 LGVSTKMTEKERDVVIPLIMRGFKDSALEAGTSV 654
L V+ + EK+RD+V+PL ++GFKD+A EAGT +
Sbjct: 122 LAVAIDLNEKQRDIVVPLFIQGFKDAADEAGTKI 155
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
protein ZK154.5 protein.
Length = 1105
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = -3
Query: 308 KDSTSFP--RTS*GTLQLLPFRSANRVSRKLASKSCATGS---NGRRKAIELG 165
KDST + R + GT+ L ++ R+ +++ S C+T S +GR K+ E G
Sbjct: 677 KDSTIYQLKRFTVGTISLTEQKTVERIKQEIPSSECSTASLDGDGREKSFETG 729
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 322 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 203
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 322 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 203
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 322 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 203
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 322 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 203
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 322 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 203
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 322 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 203
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>AF106573-7|AAC78158.1| 838|Caenorhabditis elegans Hypothetical
protein F52D2.6 protein.
Length = 838
Score = 27.9 bits (59), Expect = 6.7
Identities = 24/68 (35%), Positives = 25/68 (36%)
Frame = +1
Query: 235 TRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFMHVAIPRIGIGLDCSVTPLRHGG 414
TR L G C D KL ESL A D F P DC TP R G
Sbjct: 554 TRPEALIGERCLTSSDKSSKLNESLDVVPKLAALDSFHSTGTPVFTDCNDCP-TPKRSGF 612
Query: 415 LCLVQTTD 438
C V T +
Sbjct: 613 NCEVWTAE 620
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,355,623
Number of Sequences: 27780
Number of extensions: 321775
Number of successful extensions: 748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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