Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f02r
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444... 30 0.66
05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197... 29 1.1
01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028 29 2.0
02_01_0660 - 4913033-4913368 28 3.5
09_04_0239 + 15954995-15956242 27 6.1
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346... 27 6.1
04_04_1300 - 32457901-32457985,32458375-32459468 27 6.1
04_04_0978 - 29856872-29858023 27 6.1
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 27 8.1
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 27 8.1
>07_01_0597 +
4438858-4439847,4439936-4440067,4440397-4441176,
4441359-4441646,4441710-4441808
Length = 762
Score = 30.3 bits (65), Expect = 0.66
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 272 CTVAALNARRTTNVHTARSAVLIRATPSRVQSRLLTAEAPGAPANTQPAERAFTAKT 102
CTVAA+ R + A + + + RLL A AP A A Q + + KT
Sbjct: 71 CTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKT 127
>05_06_0237 +
26618195-26618425,26618518-26618640,26619569-26619736,
26619824-26621497
Length = 731
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -3
Query: 381 TKKNKMGSMTFLLGVFALVTFVFYAEAAGTCPLP 280
T+++ G M FL+ V ALVTFV + + A +C +P
Sbjct: 362 TRRSLFGYMGFLVAV-ALVTFVGFVKGAISCYIP 394
>01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028
Length = 482
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 200 ATPSRVQSRLLTAEAPGAPANTQPAERAFTAKTSSVT 90
+TP RV S ++ PGAPA A RA +A +V+
Sbjct: 15 STPLRVASPVVRFRRPGAPAPVVSAARASSAAVPAVS 51
>02_01_0660 - 4913033-4913368
Length = 111
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 306 EAAGTCPLPSKVYGCSPKCKEDYECTH 226
+AA P PSK +GC+P +D C H
Sbjct: 40 DAAAAAPAPSKGHGCNP--LKDKTCRH 64
>09_04_0239 + 15954995-15956242
Length = 415
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 317 SSTPKPLA-RALFLRKCTVAALNARRTTNVHTAR 219
+ST P+A R R+CT+ A +TT++H R
Sbjct: 354 TSTSSPMAKRRRRRRRCTLHGAGAEKTTSMHALR 387
>08_02_0654 -
19732679-19732837,19733234-19733479,19734470-19734667,
19735085-19735201,19735289-19735459,19735632-19735893,
19736205-19736353
Length = 433
Score = 27.1 bits (57), Expect = 6.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 61 HWITLAYFVRVTLDVFAVNAR 123
+W+T+ YF +T D+F N R
Sbjct: 52 YWLTVHYFTNLTADIFLGNHR 72
>04_04_1300 - 32457901-32457985,32458375-32459468
Length = 392
Score = 27.1 bits (57), Expect = 6.1
Identities = 25/79 (31%), Positives = 31/79 (39%)
Frame = -1
Query: 344 WVCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTARSAVLIRATPSRVQSRLLT 165
W+ WL S L LR V +R TT V LI TP+R Q +
Sbjct: 176 WLAKTWLLRYSVDALLRNLSTLRSLGVQ--QSRITTTVRM--QPTLITQTPARFQKLVGR 231
Query: 164 AEAPGAPANTQPAERAFTA 108
EA G P ++ AF A
Sbjct: 232 VEACGVPPSSGMYMWAFFA 250
>04_04_0978 - 29856872-29858023
Length = 383
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 174 AAYGGGTGSSSKHATG 127
AAYGGG GS +H G
Sbjct: 101 AAYGGGAGSGGRHGHG 116
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 165 GGGTGSSSKHATGGTGV 115
GG TGS+S ATGG+ V
Sbjct: 318 GGATGSASVQATGGSAV 334
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 230 HTARSAVLIRATPSRVQSRLLTAEAPGAPANTQPAERAFTAKTSSVTLTKYAS 72
H +S L + V+S + +A G P+NT R+ +K+ S T T +S
Sbjct: 1617 HLMKSVYLFLDALNVVRSYYVAEKARGCPSNTLKDGRSVRSKSRSPTTTPSSS 1669
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,104,854
Number of Sequences: 37544
Number of extensions: 220966
Number of successful extensions: 812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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