Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f02r
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82076-4|CAB04937.2|  438|Caenorhabditis elegans Hypothetical pr...    33   0.11 
U41548-4|AAA83203.1|  322|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical ...    27   5.5  
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    27   7.2  
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z82076-4|CAB04937.2|  438|Caenorhabditis elegans Hypothetical
           protein W07G1.5a protein.
          Length = 438

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = -1

Query: 197 TPSRVQSRLLTAEAPGAPANTQP 129
           TP  V SR  TA+APG PAN QP
Sbjct: 319 TPPVVASRPATAKAPGTPANRQP 341


>U41548-4|AAA83203.1|  322|Caenorhabditis elegans Hypothetical
           protein M02F4.7 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 348 LLGVFALVTFVFYAEAAGTCPLPSKVYGCSPKC 250
           L+ V +L+  VFY   A TCP  +K+Y  + KC
Sbjct: 5   LIFVISLIASVFYCTNALTCPTGTKIY--NAKC 35


>Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical
           protein W07G1.5b protein.
          Length = 450

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -1

Query: 197 TPSRVQSRLLTAEAPGAPANTQPAERAFTAKTSSVTLTKYAS 72
           TP  V SR  TA+APG PAN   +  A  AK+ S   T  +S
Sbjct: 319 TPPVVASRPATAKAPGTPANR--SATALEAKSVSQQPTPESS 358


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 174  AAYGGGTGSSSKHATGGTGVYCENVKCNSYEI---CKRDPMTKRMKC 43
            AA G  TGS+    + GT V C N   NS      C++  ++ R +C
Sbjct: 1463 AANGCATGSALLFPSTGTPVQCSNSGSNSCPAGYKCQKSTLSNRFQC 1509


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 182 EHDLALHELEQQTLPCVHS*SSLHLGLQPYTFEGRGHVPAASA*KTKVTNAN 337
           E  L+L E+E++ L C HS  + HLG   +T +    VP   +   K+T  N
Sbjct: 84  EPRLSLREMEEK-LECCHSTIARHLGRLGFTSKLGTWVPHELSASQKLTRVN 134


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 182 EHDLALHELEQQTLPCVHS*SSLHLGLQPYTFEGRGHVPAASA*KTKVTNAN 337
           E  L+L E+E++ L C HS  + HLG   +T +    VP   +   K+T  N
Sbjct: 59  EPRLSLREMEEK-LECCHSTIARHLGRLGFTSKLGTWVPHELSASQKLTRVN 109


>AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical
           protein F56B3.2a protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 288 PLPSKVYG-CSPKCKEDYECTHGK 220
           PLP+K+   CS KC+E   C +G+
Sbjct: 77  PLPAKIGARCSSKCREPLFCRNGE 100


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 182 EHDLALHELEQQTLPCVHS*SSLHLGLQPYTFEGRGHVPAASA*KTKVTNAN 337
           E  L+L E+E++ L C HS  + HLG   +T +    VP   +   K+T  N
Sbjct: 84  EPRLSLREMEEK-LECCHSTIARHLGRLGFTSKLGIWVPHELSASQKLTRVN 134


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 135 ATGGTGVYCENVKCNS 88
           +TG TG+ C NV+C S
Sbjct: 15  STGKTGITCANVRCGS 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,434,388
Number of Sequences: 27780
Number of extensions: 180250
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)