Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f02f
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.9  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   1.9  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   5.9  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   7.8  

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 465 IYYKNLVQNLFITSINILI*SDFSLFK 385
           + +K  +Q LFIT I  LI  D SLF+
Sbjct: 9   LLFKRYLQRLFITRILTLIRLDLSLFR 35


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 444 QNLFITSINILI*SDFSLFKLCCISFSSSLDHACI 340
           QNL++ +IN  +  DF   K+C +S ++   +AC+
Sbjct: 57  QNLYLDTINRKL-LDFDFEKVCSVSLTNLSVYACL 90


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 211 LIRATPSRVQSRLLTAEAPGAPANTQPAERAFTAKTSSV 327
           +++ T S   S LL  E+P +PA    A   FT +T +V
Sbjct: 76  ILKETTSGSSSDLLNIESPASPAE---ASSPFTVRTPTV 111


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 76  WVCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTARSAVLIRATPSRVQSRL 249
           W+CS    L+   K    A     CT AALN+ + T     RS   ++  P  ++ ++
Sbjct: 462 WLCSM---LAEKSKGYGGADLRALCTEAALNSIKRTYPQLYRSTKRLQIDPKTIKVKV 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,971
Number of Sequences: 5004
Number of extensions: 34434
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)