Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f01f
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   2.7  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   2.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   3.6  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   3.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.2  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 370 FWSWRSYVEYV 402
           FWS++SY+ Y+
Sbjct: 125 FWSYQSYMSYI 135


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 370 FWSWRSYVEYV 402
           FWS++SY+ Y+
Sbjct: 125 FWSYQSYMSYI 135


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 190 QTKLTRPRCSQGSVKDTPKYSEPNN 264
           Q  L  P CS+ S   TP +S  ++
Sbjct: 188 QILLPTPTCSEASSSPTPSHSSESS 212


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 446 FFSYIKCSVHGDYLHCLLVEFKKTIRVFEL*MLN 547
           F  Y  C       +CL V+F+K + + EL  +N
Sbjct: 330 FILYFICDEAHYASNCLRVQFQKKLLLVELSWMN 363


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 101 PNGILAQIGGKRQGPAEDHQNDL 169
           P     QIG +R  P   HQN++
Sbjct: 385 PESPYPQIGSERATPVGYHQNEV 407


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 145 C*RPPKRPSSAKTRVQTKLTRPRCSQGS 228
           C R   RPSS ++    ++ +P   QG+
Sbjct: 196 CTRYSDRPSSGRSPRTRRVKKPGAKQGA 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,129
Number of Sequences: 336
Number of extensions: 3052
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)