Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f01f
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    27   2.2  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   5.0  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   6.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   8.7  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   8.7  

>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 209 GRVNFVWTLVFAEEGRFGGLQQALAVFRRSAPVYRL 102
           GR  F WTLV + EG      + +   RR+ P+ R+
Sbjct: 532 GREGFAWTLVQSHEGHH--FSKLVKQLRRTLPIKRI 565


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 175  PKKVVLVVFSRPLPFSADLRQY 110
            P KV    FS P+P SADLR+Y
Sbjct: 1342 PSKVE--AFSIPVPISADLRKY 1361


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 452 SYIKCSVHGDYLHCLLVEFKKTIRVFE 532
           S++ C +H D L CL ++   T+++FE
Sbjct: 223 SFVLC-LHKDELLCLDIQSNSTLKIFE 248


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 74  AIHRRPSRGPNGILAQIGGKRQGPAEDHQNDLLRQKRGSKQS*LGR 211
           A+H   S   + +   +  + +G + DH  D+LR    SKQ+   R
Sbjct: 633 ALHSNRSIAKDIVSGPVDEETKGVSNDHMKDILRIYELSKQACFSR 678


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 179 FAEEGR-FGGLQQALAVFRRSAPVYRLDRVTAGDVSRSAANQL 54
           F  + R FGG+  +      +AP  +L +V  GDVS +  N +
Sbjct: 796 FTTQNREFGGIGSSSISTTMNAPSQQLSQVPFGDVSLATENSV 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,052
Number of Sequences: 5004
Number of extensions: 49763
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)