Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f01f
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0442 + 3495333-3496484                                           30   1.7  
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060...    29   2.9  
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600...    27   8.9  
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293...    27   8.9  
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919...    27   8.9  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    27   8.9  
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    27   8.9  

>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +1

Query: 91  VTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPR----CSQGSVKDTPKYSE 255
           VTR  R   A     A A   PP +P+S KT+ + K  +P+    C      +TP++ E
Sbjct: 203 VTRPPRTKQAPPTAPAPAPPPPPPQPASPKTKTKAKAKKPKRKRSCVHCGSTETPQWRE 261


>11_06_0562 +
           25003246-25003746,25004975-25005214,25005576-25006097,
           25006184-25007248,25007350-25007656,25007761-25008001,
           25008104-25008302,25008771-25008852,25008959-25009209,
           25010061-25010219,25010220-25010603
          Length = 1316

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 543 NIYSSKTRIVFLNSTKRQCK*SPCTLHFIYEKKKMLHKNTLNYF*LRNIL 394
           N    K+ + F    K  CK   C + F YEK K+ H N    + L++I+
Sbjct: 408 NCSGIKSMLNFSEMAKTDCK--MCDMSFDYEKIKLSHLNQQQLYSLKSII 455


>12_02_0188 -
           15158824-15159215,15159299-15159809,15159885-15160015,
           15160107-15160310,15160385-15161066,15161158-15161414,
           15161491-15161631,15161731-15162136
          Length = 907

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 118 ADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEGCDS 285
           AD     R   +PPK+P+S + +     +R   S    + +P Y E N+     D+
Sbjct: 694 ADTHIGKRKTRQPPKKPTSKRAKGTGPQSRNVDSDEETEHSPDYQESNDSSSRTDT 749


>08_02_1047 -
           23927822-23928112,23928736-23928981,23929119-23929395,
           23929522-23929799,23931147-23931572
          Length = 505

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 79  TSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRP 210
           +SP   R+ R  G  R +  RA  RPP + S    R  T L +P
Sbjct: 13  SSPWPARAPRRGGLLRARAVRAAPRPPSKWSLGSWRSLTALQQP 56


>07_01_1149 +
           10789733-10791209,10791326-10791588,10791745-10791954,
           10792398-10792475,10792505-10792705,10792768-10792908,
           10794749-10795714,10797824-10797919,10798450-10798638,
           10798849-10798956
          Length = 1242

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 238 YLSRTLANISAESTLFGPSFLPKKVVLVVFSRPLPFSADLRQYTVW 101
           Y ++ LAN+  +S  F PS   KK++ VV ++ +P        T W
Sbjct: 514 YSTQPLANV--KSIKFKPSLASKKIITVVSAKDIPTGGRNIGSTFW 557


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 154 PPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEGC 279
           PP+RP S + R ++ + RP      ++   +   P   QEGC
Sbjct: 360 PPRRPQSLRHRSRSPIHRP------IRSPSRSISPRRDQEGC 395


>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 203 VNFVWTLVF--AEEGRFGGLQQALAVFRRSAPVYRLDRVTAG 84
           ++F+W   F   EEG+F       +V+  SAP ++LDR T G
Sbjct: 79  LDFLWDAFFRNGEEGKF-------SVYVHSAPGFQLDRTTTG 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,428,513
Number of Sequences: 37544
Number of extensions: 302200
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)