Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f01f
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    31   0.65 
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 154 PPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEGCDSSIFSRERS 309
           PPK PS +     TK  R   S GS   TPK+++P+ + +    ++   + S
Sbjct: 469 PPKEPSISSEPTTTKKPRKSFSPGSA--TPKHTQPSENGKASGKTVGKEKES 518


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 127 RKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSE-PN 261
           R T R+  RPP+ P+S   RV    T P   QG+    P+ S  PN
Sbjct: 438 RNTDRSTSRPPRAPTSPVNRVME--TDPLMGQGTSSGAPQRSAIPN 481


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 127 RKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSE-PN 261
           R T R+  RPP+ P+S   RV    T P   QG+    P+ S  PN
Sbjct: 442 RNTDRSTSRPPRAPTSPVNRVME--TDPLMGQGTSSGAPQRSAIPN 485


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 88  AVTRSKRYTG-ADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTP 243
           A +RSK     A RR++  A   PP  P  AK+R ++   R R S  + K  P
Sbjct: 334 AKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPP 386


>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 242 LSILNLIIIKKAVIVQFSRVKDLSGQCCVVLFCKS*SKITILYFGHGVATWSMFLNQ 412
           +SI+  II+ K  +  F+    +S  C  V       K T+LY+    + W  FLNQ
Sbjct: 431 VSIVLCIILFKIAMTVFAMGLVVSSVCVPVF---GDDKYTLLYWNSDSSNWKSFLNQ 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,793,507
Number of Sequences: 27780
Number of extensions: 281530
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)