Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e24r
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    30   0.30 
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    30   0.30 
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    29   0.91 
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         27   2.8  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   4.9  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   6.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.5  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 567 HHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDW 457
           H  A+++V    TRG + I+   G +I+ D +L  +W
Sbjct: 399 HRYAKNLVESVFTRGHILITTYAGLRIYGDLILPREW 435


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -1

Query: 322 IKEVSTRMKKYNHKNMNHGKHLSQFKEMQD 233
           +K+V   + K +HK +++ +H S FK++Q+
Sbjct: 139 VKDVDKLLLKRDHKQLDYDRHRSSFKKLQE 168


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 319 KEVSTRMKKYNHKNMNHGKHLSQFKEMQDV 230
           K V+TRMKKY HK     +H +   ++Q V
Sbjct: 560 KSVATRMKKYGHKVWRLKQHDTPLSQIQAV 589


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 519 LWISWEEGAKIFEDYLLDYDWSLN-AGNWMWLSASAFFYKYFRVYS 385
           +W + +E    F   +L   W+L     W WL  +AF    F VYS
Sbjct: 274 VWCTNKEKYVNFVKKVLFKKWNLTLVSTWTWLKITAFGEPLFDVYS 319


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 2   LLYYFHFNYLNVYLFIT 52
           L YYFHF ++ + +FIT
Sbjct: 238 LSYYFHFTWIGLAVFIT 254


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 114 SLYCFLFPIQFICSCHFLYILFMYCIMVDY--SFRIVFSYNTSCISL 248
           +L CF     ++   +F+Y+L +YC   ++   F  +    ++ IS+
Sbjct: 184 ALICFKHIFLYVAPAYFVYLLRVYCFTPNFRPQFLNILKLGSTVISI 230


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 570  IHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNA 445
            I H+A ++ A   + G L+ +W  GA   E  +  + W L A
Sbjct: 2026 IQHIAAYVYAISSSTGSLYFAWNFGA---EGGIATHHWILRA 2064


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,553
Number of Sequences: 5004
Number of extensions: 59520
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)