Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e24r
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 203 1e-52
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 97 1e-20
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 96 3e-20
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 71 1e-12
01_06_0282 - 28160321-28160417,28160585-28160653,28161090-281611... 29 2.9
06_03_0746 - 24111579-24112348,24113164-24113256,24113355-241134... 29 5.1
06_01_1086 + 8890806-8890865,8890970-8891055,8891366-8891440,889... 28 8.9
05_03_0411 - 13622241-13622591,13622838-13623476,13624031-136241... 28 8.9
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 28 8.9
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 28 8.9
>02_01_0783 +
5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 203 bits (495), Expect = 1e-52
Identities = 82/139 (58%), Positives = 107/139 (76%)
Frame = -2
Query: 717 PILXKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVAC 538
P +M GN IC QIPWT+N+ AW +G+TGYP++DAIM QL++ GW+HHLARH VAC
Sbjct: 333 PNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVAC 392
Query: 537 FLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKTD 358
FLTRGDL+I WE+G +FE L+D DW++N GNWMWLS S+FFY+Y R+YSP +FG+K D
Sbjct: 393 FLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYD 452
Query: 357 KEGVYIKKYVPELKKYPRE 301
G YI+ ++P LK P+E
Sbjct: 453 PNGNYIRHFIPVLKDMPKE 471
Score = 58.4 bits (135), Expect = 6e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = -3
Query: 278 YEPWKAPQSIQRNAGCIIGEHYPKRIVNHDTIHKENIQKMATAYKLNR 135
YEPW AP SIQ+ A CIIG+ YPK +V+H KE + M AY NR
Sbjct: 474 YEPWTAPLSIQKKANCIIGKDYPKPVVDHAIASKECKKMMGEAYASNR 521
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 97.1 bits (231), Expect = 1e-20
Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Frame = -2
Query: 672 PWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGA 493
PW N+ + K W +G+TGYP VDA MR+L GW+H R +V+ F + L + W G
Sbjct: 324 PWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGM 382
Query: 492 KIFEDYLLDYDWSLNAGNWMWLSASAFFYKYF-RVYSPVAFGQKTDKEGVYIKKYVPELK 316
K F D LLD D +A W ++S S + R+ +P G K D G Y+++++PEL
Sbjct: 383 KYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELA 442
Query: 315 KYPRE 301
+ P E
Sbjct: 443 RLPTE 447
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -3
Query: 278 YEPWKAPQSIQRNAGCIIGEHYPKRIVNHDTIHKENIQKMATAYKLNREKKA 123
+ PW AP S+ + AG +G +YP IV D + + ++ ++L +A
Sbjct: 450 HHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEMWQLEAASRA 501
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 95.9 bits (228), Expect = 3e-20
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Frame = -2
Query: 672 PWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGA 493
PW ++ + K W +G+TGYP VDA MR+L GW+H R +V+ F + L + W G
Sbjct: 341 PWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGM 399
Query: 492 KIFEDYLLDYDWSLNAGNWMWLSASAFFYKYF-RVYSPVAFGQKTDKEGVYIKKYVPELK 316
K F D LLD D +A W ++S S + R+ +P G K D G Y+++++PEL
Sbjct: 400 KYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELA 459
Query: 315 KYPRE 301
+ P E
Sbjct: 460 RLPTE 464
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 278 YEPWKAPQSIQRNAGCIIGEHYPKRIVNHDTIHKENIQKMATAYKLNREKKA 123
+ PW AP+S+ + AG +G +YP IV D ++ ++L +A
Sbjct: 467 HHPWDAPESVLQAAGIELGSNYPLPIVELDAAKTRLQDALSEMWELEAASRA 518
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 70.9 bits (166), Expect = 1e-12
Identities = 34/85 (40%), Positives = 47/85 (55%)
Frame = -2
Query: 672 PWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGA 493
PW ++ K+W +G TGYP VDA MR+L GW H+ R +++ F + L I W G
Sbjct: 320 PWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVK-FLLIPWTWGM 378
Query: 492 KIFEDYLLDYDWSLNAGNWMWLSAS 418
K F D LLD D + W ++S S
Sbjct: 379 KYFWDVLLDADLESDILGWQYISGS 403
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 372 GQKTDKEGVYIKKYVPELKKYPRE 301
GQK D +GVY++ ++PEL + P E
Sbjct: 470 GQKYDPDGVYVRTWIPELARMPTE 493
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -3
Query: 278 YEPWKAPQSIQRNAGCIIGEHYPKRIVNHDTIHKENIQKMATAYKLNREKK 126
+ PW AP I AG +G +YPK IV+ + ++T ++L+ +K
Sbjct: 496 HHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLDDSISTMWQLDTAEK 546
>01_06_0282 -
28160321-28160417,28160585-28160653,28161090-28161145,
28161650-28161741,28162314-28162398,28162512-28162628,
28162766-28162798,28163109-28163199,28163908-28163967,
28164115-28164180,28165238-28165430,28165665-28165821
Length = 371
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 431 GCQLLHSFTNISEFIVQWHLVRKLIKREFTLRSM 330
GC + + I EF+ W ++RKL+K FTL S+
Sbjct: 301 GCLVCSLVSLIPEFLSNWFILRKLVK--FTLSSL 332
>06_03_0746 -
24111579-24112348,24113164-24113256,24113355-24113460,
24113587-24113783,24113893-24114103,24114198-24114273,
24114347-24114426,24114659-24114754,24114894-24114965,
24115067-24115264,24115273-24115569
Length = 731
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 441 NWMWLSASAFFYKYFRVYSPVAFGQKTDKEGVYIKKYVP 325
N W + ++ + F QK DK G+YI +Y+P
Sbjct: 335 NSFWCCYGTGIESFSKLGDSIYFEQKGDKPGLYIIQYIP 373
>06_01_1086 +
8890806-8890865,8890970-8891055,8891366-8891440,
8892780-8892921,8893304-8893490,8893944-8894425,
8894595-8894975,8895056-8895100,8896486-8896639,
8897750-8897895,8898016-8898099
Length = 613
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 657 DAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLAR 553
D+F AWA GK +P V + R L + W+ AR
Sbjct: 476 DSFTTAWAGGKALFP-VRNLPRALAERHWVGPTAR 509
>05_03_0411 -
13622241-13622591,13622838-13623476,13624031-13624177,
13624364-13624486,13624609-13624784,13625168-13625444
Length = 570
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 248 QRNAGCIIGEHYPKRIVNHDTIHKENIQKMATAYKLNREKKAVKRPRS 105
+R I E+ P+R H +EN +M T + +R A RP S
Sbjct: 8 EREQAPTIEENKPRRATRHTEETRENDDEMGTPHAYSRISPASHRPLS 55
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -2
Query: 474 LLDYDWSLNAGN-WMWLSASA 415
++DYDW+++A N W W A A
Sbjct: 252 IIDYDWAVHASNYWEWEIADA 272
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -2
Query: 474 LLDYDWSLNAGN-WMWLSASA 415
++DYDW+++A N W W A A
Sbjct: 252 IIDYDWAVHASNYWEWEIADA 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,506,152
Number of Sequences: 37544
Number of extensions: 330253
Number of successful extensions: 745
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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