Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e24r
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine r...    29   3.4  
Z36753-7|CAA85339.1|  339|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine
           receptor, class j protein37 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +3

Query: 87  SDHTKLRSWSLYCFLFPIQFICSCHFLYILFMYCIMVDYSFRIVFSYNTSCISLN*LR 260
           +DHT LRSWS       I  I  C FL +  M    ++       S  TS + L  LR
Sbjct: 190 TDHTLLRSWSTTILWTSISAISICMFLMLACMIMKKLN-KMSSCMSKKTSTLQLELLR 246


>Z36753-7|CAA85339.1|  339|Caenorhabditis elegans Hypothetical
           protein T09A5.8 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 275 EPWKAPQSIQRNAGCIIGEHYPKRIVNHDTIHKENIQKMATAYKLNREKKAVK 117
           + W+  + +Q  A  ++ E+Y K  V   T   E +QK     K  + KK  K
Sbjct: 53  DTWEPEEDLQECASEVVAEYYKKLKVTDKTELIELLQKQIKKNKSQKSKKRSK 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,843
Number of Sequences: 27780
Number of extensions: 316550
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)