Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e24r
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.    213   1e-57
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.0  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score =  213 bits (520), Expect = 1e-57
 Identities = 87/137 (63%), Positives = 107/137 (78%)
 Frame = -2

Query: 717 PILXKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVAC 538
           P   +M GN IC+QIPW KN   L  WA G+TG+P++DAIM QL++EGWIHHLARH VAC
Sbjct: 321 PNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVAC 380

Query: 537 FLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKTD 358
           FLTRGDLWISWEEG K+F++ LLD DWS+NAG WMWLS S+FF ++F  Y PV FG+K D
Sbjct: 381 FLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 440

Query: 357 KEGVYIKKYVPELKKYP 307
             G YI++Y+P LK +P
Sbjct: 441 PNGDYIRRYLPVLKNFP 457



 Score = 49.6 bits (113), Expect = 3e-08
 Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = -3

Query: 278 YEPWKAPQSIQRNAGCIIGEHYPKRIVNHDTIHKENIQKMATAY-KLNR 135
           +EPW AP ++QR A CIIG+ Y   +VNH    + NI++M   Y +LN+
Sbjct: 462 HEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQVYQQLNK 510


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 160 IFCIFSLCIVSWLTIR 207
           +  +F+LCIVS++ +R
Sbjct: 5   VILLFTLCIVSYMMVR 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,999
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)