Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e24f
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 58 5e-09
06_03_1012 - 26893828-26894052,26894137-26894355,26894513-268946... 39 0.002
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 31 0.46
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 31 0.80
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 29 1.8
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 29 1.8
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 28 5.6
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 27 9.9
>02_01_0783 +
5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 58.0 bits (134), Expect = 5e-09
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Frame = +3
Query: 147 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI-----------KDKVGINRLRF 293
WFR LR+HDN AL A + L P++ LDP + G+ R+RF
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAAAR--LYPVFVLDPRYLRPDQAAPSPGSARAGVARVRF 75
Query: 294 LLQSLEXXXXXXXXXXTCLYVLR----GKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQD 461
LL+SL + L +LR G + DW + L + D +P + +D
Sbjct: 76 LLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARD 135
Query: 462 EYIEDIAEKKGVFINKRVQHTVYDVHKVL 548
+ + D A G+ + V HT++D +++
Sbjct: 136 KKVMDFAAASGIDVFSPVSHTLFDPAEII 164
>06_03_1012 -
26893828-26894052,26894137-26894355,26894513-26894652,
26894790-26895198
Length = 330
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = +3
Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK---------DKVGINRLRF 293
I WFR DLR+ DN A+ A + P+Y +DP I K G R +F
Sbjct: 87 IVWFRNDLRVLDN----EAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQF 142
Query: 294 LLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKL 392
L++ LE L + GK D+LP +
Sbjct: 143 LIECLEDLKRNLTKQGLDLLIRHGKPEDILPSI 175
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 351 YVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEF-VQQDEYIEDIAE 485
YVL G+A++++ D+ +KYL V +DPE V D+Y+ D E
Sbjct: 800 YVLGGRAMEIVYN--DEKLIKYLATAVQVDPERPVLVDKYLIDAIE 843
>09_06_0061 +
20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 30.7 bits (66), Expect = 0.80
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 147 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD 266
WF+ DLR+ D+ L A+ AE R+ +L P+Y D I D
Sbjct: 49 WFKHDLRVDDHPGLAAAV-AAEPRRPVL-PLYVFDRRILD 86
>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 366 KAVDLLPKLFDDWQVKYLTCQ-VDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHK 542
+ +++LP+ + W + + + I+P+F D Y++ + F+NK V Y+ K
Sbjct: 869 ECIEVLPECYYPWFAQSMVMKRASIEPKF--HDLYLKFFVKVNSRFLNKEVLKATYENCK 926
Query: 543 VL 548
+L
Sbjct: 927 IL 928
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 120 MSKTPTVIHWFRLDLRIHDNLALRNAINE 206
M+ + + WFR DLRI DN AL +A +
Sbjct: 1 MAGSERTVVWFRRDLRIDDNPALASAARD 29
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 135 TVIHWFRLDLRIHDNLALRNAINEA 209
TV+ WFR DLR+ DN AL A A
Sbjct: 20 TVV-WFRRDLRVEDNPALAAAARAA 43
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 135 TVIHWFRLDLRIHDNLALRNA 197
TV+ WFR DLR+ DN AL A
Sbjct: 13 TVV-WFRRDLRVEDNPALAAA 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,918,721
Number of Sequences: 37544
Number of extensions: 204391
Number of successful extensions: 401
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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