Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e24f
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               97   1e-20
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               93   2e-19
SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)                86   2e-17
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)        85   4e-17
SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   5e-15
SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               30   1.4  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1074

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
 Frame = +3

Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGI--NRLRFLLQSLEX 314
           +HWFR DLR+HDN AL  +    +        +YFLDP    +  +  NR  FLL+SL  
Sbjct: 200 MHWFRKDLRLHDNPALLESFKNCQ----AFYGVYFLDPASVQRSNLSPNRWWFLLESLRD 255

Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
                    + L V+RG+ V  +PKL D W +K LT + D +P   Q+D  +  +A+  G
Sbjct: 256 LDYNLRSLGSRLLVVRGQPVQEMPKLLDQWNIKRLTLEYDSEPPAKQRDAVVTHLAKNLG 315

Query: 495 VFINKRVQHTVYDVHKV 545
           V + +RV HT+YDV  V
Sbjct: 316 VEVIQRVSHTLYDVETV 332



 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
 Frame = +3

Query: 135  TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK--DKVGINRLRFLLQSL 308
            T +HWFR DLR+HDN +L  +++          PIY LD       K+  NR  FL + L
Sbjct: 695  TSVHWFRKDLRLHDNPSLLASLDNCST----FFPIYVLDMESARASKISANRWNFLCECL 750

Query: 309  EXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEK 488
            E          + L+V+RG+A+D+LP+LF +W V  LT + + +P   Q+D  I+ +AEK
Sbjct: 751  EALDRQLRVLGSRLFVIRGRAMDVLPRLFHEWSVNRLTFERESEPAGRQRDAVIQMLAEK 810

Query: 489  KGVFINKRVQHTVYDVHKVL 548
              V + +   H +YD  +VL
Sbjct: 811  ANVQVLQHNAHLLYDTDEVL 830


>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1291

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
 Frame = +3

Query: 135 TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK--DKVGINRLRFLLQSL 308
           T +HWFR DLR+HDN +L  +++          PIY LD       K+  NR  FL + L
Sbjct: 225 TSVHWFRKDLRLHDNPSLLASLDNCST----FFPIYVLDMESARASKISANRWNFLCECL 280

Query: 309 EXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEK 488
           E          + L+V+RG+A+D+LP+LF +W V  LT + + +P   Q+D  I+ +AE 
Sbjct: 281 EALDRQLRVLGSRLFVIRGRAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLAEN 340

Query: 489 KGVFINKRVQHTVYDVHKVL 548
             V + +   H +YD  +VL
Sbjct: 341 ANVQLLQHNAHLLYDTDEVL 360



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
 Frame = +3

Query: 126  KTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI---KDKVGINRLRFL 296
            KT   +HWFR DLR+HDN +L  A++ +++       +YFLDP+I     KV    L FL
Sbjct: 715  KTHNTMHWFRKDLRLHDNPSLLKALSGSQS----FYGVYFLDPDILAPSSKVSPRTLDFL 770

Query: 297  LQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 476
            LQ L           + L+V+R  A+  LP L   W +  ++ + D DP  V +D   + 
Sbjct: 771  LQCLRDLDDRLRGYGSRLFVIRECALSALPGLLKKWDITRMSFEADQDPHAVTRDVVAKQ 830

Query: 477  IAEKKGVFINKRVQHTVYD 533
            IA   GV +   V HT++D
Sbjct: 831  IAAGLGVEVISEVSHTIFD 849


>SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 798

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
 Frame = +3

Query: 114 SKMSKTP----TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN-IKDK-VG 275
           +K+S  P     VIHWFR DLR+HDN AL + +            +Y LDPN IK   V 
Sbjct: 342 TKLSSAPGLGNNVIHWFRKDLRLHDNPALLDGLKNCR----AFYGVYILDPNNIKAAIVS 397

Query: 276 INRLRFLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQ 455
            NR  FLLQ L           T LYV RG+   + P++F++W +  LT + + +P   +
Sbjct: 398 ANRWNFLLQCLADLDNNLKKCGTRLYVFRGQPTTVFPQMFNEWNITKLTFESECEPFGQR 457

Query: 456 QDEYIEDIAEKKGVFINKRVQHTVYDVHKVL 548
           +D  I+ +AE+ GV ++ +  H++Y + ++L
Sbjct: 458 RDVAIQSLAEEFGVKVSCKPSHSLYSIEQIL 488



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = +3

Query: 372 VDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDV 536
           +D+ PKL   W +  LT + D +P   Q+D  ++ IAEK GV +     HT+YD+
Sbjct: 4   IDVCPKLIKQWNISRLTFEYDSEPFPRQRDLAVKRIAEKAGVDVIVCSSHTLYDI 58


>SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 506

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
 Frame = +3

Query: 192 NAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEXXXXXXXXXXTCLYVLRG 365
           +A+ EA      +RP+Y LDP++     +G+ R RF+L+SL           + L+V+RG
Sbjct: 57  SALKEAFETSQTVRPLYVLDPDVLKNGNIGVVRWRFILESLADLDNNLKKLNSRLFVVRG 116

Query: 366 KAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDV 536
           +  ++ PKLF +W++  LT +VD      +QD  +  IA K GV I +RV HT+YD+
Sbjct: 117 RPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIANKLGVDIEQRVSHTLYDL 173


>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
          Length = 432

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 46/138 (33%), Positives = 70/138 (50%)
 Frame = +3

Query: 135 TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEX 314
           T  HWFR DLR+HDN AL++A++ A+        ++ L          NR +FLLQ L+ 
Sbjct: 7   TSCHWFRKDLRLHDNPALKDALDNAD----CFYGVFVLSNFHPSITSGNRWKFLLQCLQD 62

Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
                    + L +L G  V++ PKL    +V  LT +VD +P   Q+D  I  IA   G
Sbjct: 63  LNNSLEELGSKLIILTGSPVEIFPKLLHSLKVTKLTFEVDTEPFAQQRDSVISHIARSAG 122

Query: 495 VFINKRVQHTVYDVHKVL 548
           + +     HT+YD+  ++
Sbjct: 123 IEVKTHASHTLYDIESLV 140


>SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
 Frame = +3

Query: 117 KMSKTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--IKDKVGINRLR 290
           K  KT   IHW R  LRIHDN ALR+A+          R +Y LD        +G+N  R
Sbjct: 13  KAKKTSHSIHWLRKGLRIHDNPALRDAVLNWGT----FRVVYILDTKSVASSNIGLNLWR 68

Query: 291 FLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDP 443
           FLLQ+LE          + L+V+RG+  D+ P+LF +W +  LT + D +P
Sbjct: 69  FLLQALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEP 119


>SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 524

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
 Frame = +3

Query: 123 SKTP-TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--------IKDKVG 275
           SKT  TVI   R DLR HDN AL  A   A+     + P+Y  DP+           K  
Sbjct: 4   SKTQKTVICLLRNDLRYHDNEALLWAHKNAD----FVLPLYCFDPDHYKTTWRFSLPKTA 59

Query: 276 INRLRFLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQ----VKYLTCQVDIDP 443
             R +FLL+S+           + L + + + ++ + KL +  +    V  +  Q ++  
Sbjct: 60  QYRAKFLLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTY 119

Query: 444 EFVQQDEYIEDIAEKKGVFIN 506
           E +  ++ + +  +K G+ ++
Sbjct: 120 EELNVEKALVEFCKKSGIHMH 140


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 426  QVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVL 548
            QV  DP F    + I  IA+K+G+ ++  +Q    DV +VL
Sbjct: 2500 QVSNDPRFDSYAQEITQIAKKQGLKVDLHMQEYSLDVTEVL 2540


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,928
Number of Sequences: 59808
Number of extensions: 260413
Number of successful extensions: 595
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)