Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e24f
         (550 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    92   1e-20
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    66   9e-13
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          24   2.9  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   6.6  
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             23   8.8  

>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 91.9 bits (218), Expect = 1e-20
 Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
 Frame = +3

Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEX 314
           +HWFR  LR+HDN ALR  +  A       R ++ +DP       VGIN+ RFLLQ L+ 
Sbjct: 7   VHWFRKGLRLHDNPALREGLRGART----FRCVFIIDPWFAGSSNVGINKWRFLLQCLDD 62

Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
                    + L+V+RG+  D LPKLF +W    LT + D +P    +D  I ++ ++ G
Sbjct: 63  LDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKELG 122

Query: 495 VFINKRVQHTVYDVHKVL 548
           + +     HT+Y++ +++
Sbjct: 123 IEVISAASHTLYNLERII 140


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 65.7 bits (153), Expect = 9e-13
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
 Frame = +3

Query: 141 IHWFRLDLRIHDNLALRNAI-NEAENRKH---LLRPIYFLDPNIKDK--VGINRLRFLLQ 302
           I WFR  LR+HDN +L  A+ ++  N+      L PI+  D        VG NR++FLL+
Sbjct: 6   ILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRMKFLLE 65

Query: 303 SLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIA 482
           SL             L V RG +V +L +LF++  +K L  + D +P + ++D+ +  + 
Sbjct: 66  SLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDCEPIWKERDDAVAKLC 125

Query: 483 EKKGVFINKRVQHTVYDVHKVL 548
               V   + V HT+++  +V+
Sbjct: 126 RTMDVRCVENVSHTLWNPIEVI 147


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 423 CQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQH 521
           C+ +I   F + DEY +++ ++  +F    V H
Sbjct: 422 CKNNIKIRFYELDEYDQEVWQEMAIFSEADVHH 454


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 24  HYTARSEIVTYKTRTFHLFL 83
           HYTAR  I + K   FH +L
Sbjct: 511 HYTARHPIGSLKRFGFHTYL 530


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 18  TTHYTARSEIVTYKTRTFHLF 80
           T   T   E+ TY  RTF L+
Sbjct: 800 TVTITETQELATYSIRTFQLY 820


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,291
Number of Sequences: 2352
Number of extensions: 9246
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)