Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e24f
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF015898-1|ABM64209.1| 586|Homo sapiens photolyase-like cryptoc... 106 6e-23
D84657-1|BAA12710.1| 586|Homo sapiens photolyase homolog protein. 106 6e-23
D83702-1|BAA12068.1| 586|Homo sapiens photolyase protein. 106 6e-23
BC030519-1|AAH30519.1| 586|Homo sapiens cryptochrome 1 (photoly... 106 6e-23
EF015899-1|ABM64210.1| 593|Homo sapiens photolyase-like cryptoc... 100 3e-21
BC041814-1|AAH41814.1| 593|Homo sapiens cryptochrome 2 (photoly... 100 3e-21
AB014558-1|BAA31633.1| 589|Homo sapiens KIAA0658 protein protein. 100 3e-21
>EF015898-1|ABM64209.1| 586|Homo sapiens photolyase-like
cryptochrome 1 protein.
Length = 586
Score = 106 bits (254), Expect = 6e-23
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Frame = +3
Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEX 314
+HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ LE
Sbjct: 6 VHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCLED 61
Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
+ L+V+RG+ D+ P+LF +W + L+ + D +P ++D I+ +A + G
Sbjct: 62 LDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAG 121
Query: 495 VFINKRVQHTVYDVHKVL 548
V + R+ HT+YD+ K++
Sbjct: 122 VEVIVRISHTLYDLDKII 139
>D84657-1|BAA12710.1| 586|Homo sapiens photolyase homolog protein.
Length = 586
Score = 106 bits (254), Expect = 6e-23
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Frame = +3
Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEX 314
+HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ LE
Sbjct: 6 VHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCLED 61
Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
+ L+V+RG+ D+ P+LF +W + L+ + D +P ++D I+ +A + G
Sbjct: 62 LDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAG 121
Query: 495 VFINKRVQHTVYDVHKVL 548
V + R+ HT+YD+ K++
Sbjct: 122 VEVIVRISHTLYDLDKII 139
>D83702-1|BAA12068.1| 586|Homo sapiens photolyase protein.
Length = 586
Score = 106 bits (254), Expect = 6e-23
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Frame = +3
Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEX 314
+HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ LE
Sbjct: 6 VHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCLED 61
Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
+ L+V+RG+ D+ P+LF +W + L+ + D +P ++D I+ +A + G
Sbjct: 62 LDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAG 121
Query: 495 VFINKRVQHTVYDVHKVL 548
V + R+ HT+YD+ K++
Sbjct: 122 VEVIVRISHTLYDLDKII 139
>BC030519-1|AAH30519.1| 586|Homo sapiens cryptochrome 1
(photolyase-like) protein.
Length = 586
Score = 106 bits (254), Expect = 6e-23
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Frame = +3
Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEX 314
+HWFR LR+HDN AL+ I A+ +R +Y LDP VGINR RFLLQ LE
Sbjct: 6 VHWFRKGLRLHDNPALKECIQGADT----IRCVYILDPWFAGSSNVGINRWRFLLQCLED 61
Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
+ L+V+RG+ D+ P+LF +W + L+ + D +P ++D I+ +A + G
Sbjct: 62 LDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAG 121
Query: 495 VFINKRVQHTVYDVHKVL 548
V + R+ HT+YD+ K++
Sbjct: 122 VEVIVRISHTLYDLDKII 139
>EF015899-1|ABM64210.1| 593|Homo sapiens photolyase-like
cryptochrome 2 protein.
Length = 593
Score = 100 bits (240), Expect = 3e-21
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Frame = +3
Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP--NIKDKVGINRLRFLLQSLEX 314
+HWFR LR+HDN AL A+ A +R +Y LDP VGINR RFLLQSLE
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGAR----CVRCVYILDPWFAASSSVGINRWRFLLQSLED 80
Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
+ L+V+RG+ D+ P+LF +W V LT + D +P ++D I +A++ G
Sbjct: 81 LDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAG 140
Query: 495 VFINKRVQHTVYDVHKVL 548
V + HT+YD+ +++
Sbjct: 141 VEVVTENSHTLYDLDRII 158
>BC041814-1|AAH41814.1| 593|Homo sapiens cryptochrome 2
(photolyase-like) protein.
Length = 593
Score = 100 bits (240), Expect = 3e-21
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Frame = +3
Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP--NIKDKVGINRLRFLLQSLEX 314
+HWFR LR+HDN AL A+ A +R +Y LDP VGINR RFLLQSLE
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGAR----CVRCVYILDPWFAASSSVGINRWRFLLQSLED 80
Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
+ L+V+RG+ D+ P+LF +W V LT + D +P ++D I +A++ G
Sbjct: 81 LDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAG 140
Query: 495 VFINKRVQHTVYDVHKVL 548
V + HT+YD+ +++
Sbjct: 141 VEVVTENSHTLYDLDRII 158
>AB014558-1|BAA31633.1| 589|Homo sapiens KIAA0658 protein protein.
Length = 589
Score = 100 bits (240), Expect = 3e-21
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Frame = +3
Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDP--NIKDKVGINRLRFLLQSLEX 314
+HWFR LR+HDN AL A+ A +R +Y LDP VGINR RFLLQSLE
Sbjct: 21 VHWFRKGLRLHDNPALLAAVRGAR----CVRCVYILDPWFAASSSVGINRWRFLLQSLED 76
Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
+ L+V+RG+ D+ P+LF +W V LT + D +P ++D I +A++ G
Sbjct: 77 LDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAG 136
Query: 495 VFINKRVQHTVYDVHKVL 548
V + HT+YD+ +++
Sbjct: 137 VEVVTENSHTLYDLDRII 154
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,348,087
Number of Sequences: 237096
Number of extensions: 1340556
Number of successful extensions: 5277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5270
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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