Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e24f
(550 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-3257|AAF53904.1| 540|Drosophila melanogaster CG2488-PB... 113 1e-25
AE014134-3256|AAN11080.1| 540|Drosophila melanogaster CG2488-PA... 113 1e-25
AY089584-1|AAL90322.1| 540|Drosophila melanogaster RE11660p pro... 113 1e-25
D83701-1|BAA12067.1| 540|Drosophila melanogaster photolyase pro... 113 2e-25
AY051514-1|AAK92938.1| 542|Drosophila melanogaster GH16672p pro... 58 8e-09
AF099734-1|AAC83828.1| 542|Drosophila melanogaster cryptochrome... 58 8e-09
AE014297-2641|AAF55649.1| 542|Drosophila melanogaster CG3772-PA... 58 8e-09
AB019389-1|BAA35000.1| 542|Drosophila melanogaster blue light p... 58 8e-09
AB018400-1|BAA33787.1| 542|Drosophila melanogaster blue-light r... 58 8e-09
S73530-1|AAB32328.1| 536|Drosophila melanogaster phr protein. 38 0.012
D26021-1|BAA05042.1| 640|Drosophila melanogaster photolyase pro... 38 0.012
AY084133-1|AAL89871.1| 555|Drosophila melanogaster RE21178p pro... 38 0.012
AE013599-515|AAM68868.1| 535|Drosophila melanogaster CG11205-PB... 38 0.012
AE013599-514|AAF59185.1| 555|Drosophila melanogaster CG11205-PA... 38 0.012
>AE014134-3257|AAF53904.1| 540|Drosophila melanogaster CG2488-PB,
isoform B protein.
Length = 540
Score = 113 bits (273), Expect = 1e-25
Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 4/146 (2%)
Frame = +3
Query: 123 SKTPTVIHWFRLDLRIHDNLALRNAINEAENR--KHLLRPIYFLDPNIKD--KVGINRLR 290
S+ T++HWFR LR+HDN AL + A K+ +RPI+ LDP I D +VG NR R
Sbjct: 3 SQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWR 62
Query: 291 FLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYI 470
FL Q+LE + L+V+RGK ++ P++F W+V+ LT + DI+P V +D +
Sbjct: 63 FLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAV 122
Query: 471 EDIAEKKGVFINKRVQHTVYDVHKVL 548
+ +A+ +GV + HT+Y+ V+
Sbjct: 123 QKLAKAEGVRVETHCSHTIYNPELVI 148
>AE014134-3256|AAN11080.1| 540|Drosophila melanogaster CG2488-PA,
isoform A protein.
Length = 540
Score = 113 bits (273), Expect = 1e-25
Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 4/146 (2%)
Frame = +3
Query: 123 SKTPTVIHWFRLDLRIHDNLALRNAINEAENR--KHLLRPIYFLDPNIKD--KVGINRLR 290
S+ T++HWFR LR+HDN AL + A K+ +RPI+ LDP I D +VG NR R
Sbjct: 3 SQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWR 62
Query: 291 FLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYI 470
FL Q+LE + L+V+RGK ++ P++F W+V+ LT + DI+P V +D +
Sbjct: 63 FLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAV 122
Query: 471 EDIAEKKGVFINKRVQHTVYDVHKVL 548
+ +A+ +GV + HT+Y+ V+
Sbjct: 123 QKLAKAEGVRVETHCSHTIYNPELVI 148
>AY089584-1|AAL90322.1| 540|Drosophila melanogaster RE11660p
protein.
Length = 540
Score = 113 bits (272), Expect = 1e-25
Identities = 58/147 (39%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Frame = +3
Query: 123 SKTPTVIHWFRLDLRIHDNLALRN---AINEAENRKHLLRPIYFLDPNIKD--KVGINRL 287
S+ T++HWFR LR+HDN AL + A N A R + +RPI+ LDP I D +VG NR
Sbjct: 3 SQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGR-YFVRPIFILDPGILDWMQVGANRW 61
Query: 288 RFLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEY 467
RFL Q+LE + L+V+RGK ++ P++F W+V+ LT + DI+P V +D
Sbjct: 62 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121
Query: 468 IEDIAEKKGVFINKRVQHTVYDVHKVL 548
++ +A+ +GV + HT+Y+ V+
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVI 148
>D83701-1|BAA12067.1| 540|Drosophila melanogaster photolyase
protein.
Length = 540
Score = 113 bits (271), Expect = 2e-25
Identities = 55/141 (39%), Positives = 85/141 (60%), Gaps = 4/141 (2%)
Frame = +3
Query: 123 SKTPTVIHWFRLDLRIHDNLALRNAINEAENR--KHLLRPIYFLDPNIKD--KVGINRLR 290
S+ T++HWFR LR+HDN AL + A K+ +RPI+ LDP I D +VG NR R
Sbjct: 3 SQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWR 62
Query: 291 FLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYI 470
FL Q+LE + L+V+RGK ++ P++F W+V+ LT + DI+P V +D +
Sbjct: 63 FLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAV 122
Query: 471 EDIAEKKGVFINKRVQHTVYD 533
+ +A+ +GV + HT+Y+
Sbjct: 123 QKLAKAEGVRVETHCSHTIYN 143
>AY051514-1|AAK92938.1| 542|Drosophila melanogaster GH16672p
protein.
Length = 542
Score = 58.0 bits (134), Expect = 8e-09
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Frame = +3
Query: 147 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD--KVGINRLRFLLQSLEXXX 320
WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFLL SL+
Sbjct: 10 WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQDID 68
Query: 321 XXXXXXXTC---LYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 491
L V G+ + +L + ++ + + D +P + ++DE I + +
Sbjct: 69 DQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCREL 128
Query: 492 GVFINKRVQHTVYDVHKVL 548
+ ++V HT++D V+
Sbjct: 129 NIDFVEKVSHTLWDPQLVI 147
>AF099734-1|AAC83828.1| 542|Drosophila melanogaster cryptochrome
protein.
Length = 542
Score = 58.0 bits (134), Expect = 8e-09
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Frame = +3
Query: 147 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD--KVGINRLRFLLQSLEXXX 320
WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFLL SL+
Sbjct: 10 WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQDID 68
Query: 321 XXXXXXXTC---LYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 491
L V G+ + +L + ++ + + D +P + ++DE I + +
Sbjct: 69 DQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCREL 128
Query: 492 GVFINKRVQHTVYDVHKVL 548
+ ++V HT++D V+
Sbjct: 129 NIDFVEKVSHTLWDPQLVI 147
>AE014297-2641|AAF55649.1| 542|Drosophila melanogaster CG3772-PA
protein.
Length = 542
Score = 58.0 bits (134), Expect = 8e-09
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Frame = +3
Query: 147 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD--KVGINRLRFLLQSLEXXX 320
WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFLL SL+
Sbjct: 10 WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQDID 68
Query: 321 XXXXXXXTC---LYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 491
L V G+ + +L + ++ + + D +P + ++DE I + +
Sbjct: 69 DQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCREL 128
Query: 492 GVFINKRVQHTVYDVHKVL 548
+ ++V HT++D V+
Sbjct: 129 NIDFVEKVSHTLWDPQLVI 147
>AB019389-1|BAA35000.1| 542|Drosophila melanogaster blue light
photoreceptor protein.
Length = 542
Score = 58.0 bits (134), Expect = 8e-09
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Frame = +3
Query: 147 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD--KVGINRLRFLLQSLEXXX 320
WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFLL SL+
Sbjct: 10 WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQDID 68
Query: 321 XXXXXXXTC---LYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 491
L V G+ + +L + ++ + + D +P + ++DE I + +
Sbjct: 69 DQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCREL 128
Query: 492 GVFINKRVQHTVYDVHKVL 548
+ ++V HT++D V+
Sbjct: 129 NIDFVEKVSHTLWDPQLVI 147
>AB018400-1|BAA33787.1| 542|Drosophila melanogaster blue-light
receptor protein.
Length = 542
Score = 58.0 bits (134), Expect = 8e-09
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Frame = +3
Query: 147 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD--KVGINRLRFLLQSLEXXX 320
WFR LR+HDN AL A+ + + L+ P++ D VG NR+RFLL SL+
Sbjct: 10 WFRHGLRLHDNPALLAALADKDQGIALI-PVFIFDGESAGTKNVGYNRMRFLLDSLQDID 68
Query: 321 XXXXXXXTC---LYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 491
L V G+ + +L + ++ + + D +P + ++DE I + +
Sbjct: 69 DQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCREL 128
Query: 492 GVFINKRVQHTVYDVHKVL 548
+ ++V HT++D V+
Sbjct: 129 NIDFVEKVSHTLWDPQLVI 147
>S73530-1|AAB32328.1| 536|Drosophila melanogaster phr protein.
Length = 536
Score = 37.5 bits (83), Expect = 0.012
Identities = 35/144 (24%), Positives = 60/144 (41%)
Frame = +3
Query: 117 KMSKTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFL 296
K S V++W D R+ DN AL A A + L ++ L P + I +F+
Sbjct: 90 KESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT-IRHYKFM 148
Query: 297 LQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 476
+ L+ ++L G AV+ LP+ + + C D P + + +++ED
Sbjct: 149 MGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVC--DFAPLRLPR-QWVED 205
Query: 477 IAEKKGVFINKRVQHTVYDVHKVL 548
+ G + K V D H V+
Sbjct: 206 V----GKALPKSVPLVQVDAHNVV 225
>D26021-1|BAA05042.1| 640|Drosophila melanogaster photolyase
protein.
Length = 640
Score = 37.5 bits (83), Expect = 0.012
Identities = 35/144 (24%), Positives = 60/144 (41%)
Frame = +3
Query: 117 KMSKTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFL 296
K S V++W D R+ DN AL A A + L ++ L P + I +F+
Sbjct: 195 KESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT-IRHYKFM 253
Query: 297 LQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 476
+ L+ ++L G AV+ LP+ + + C D P + + +++ED
Sbjct: 254 MGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVC--DFAPLRLPR-QWVED 310
Query: 477 IAEKKGVFINKRVQHTVYDVHKVL 548
+ G + K V D H V+
Sbjct: 311 V----GKALPKSVPLVQVDAHNVV 330
>AY084133-1|AAL89871.1| 555|Drosophila melanogaster RE21178p
protein.
Length = 555
Score = 37.5 bits (83), Expect = 0.012
Identities = 35/144 (24%), Positives = 60/144 (41%)
Frame = +3
Query: 117 KMSKTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFL 296
K S V++W D R+ DN AL A A + L ++ L P + I +F+
Sbjct: 110 KESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT-IRHYKFM 168
Query: 297 LQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 476
+ L+ ++L G AV+ LP+ + + C D P + + +++ED
Sbjct: 169 MGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVC--DFAPLRLPR-QWVED 225
Query: 477 IAEKKGVFINKRVQHTVYDVHKVL 548
+ G + K V D H V+
Sbjct: 226 V----GKALPKSVPLVQVDAHNVV 245
>AE013599-515|AAM68868.1| 535|Drosophila melanogaster CG11205-PB,
isoform B protein.
Length = 535
Score = 37.5 bits (83), Expect = 0.012
Identities = 35/144 (24%), Positives = 60/144 (41%)
Frame = +3
Query: 117 KMSKTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFL 296
K S V++W D R+ DN AL A A + L ++ L P + I +F+
Sbjct: 90 KESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT-IRHYKFM 148
Query: 297 LQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 476
+ L+ ++L G AV+ LP+ + + C D P + + +++ED
Sbjct: 149 MGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVC--DFAPLRLPR-QWVED 205
Query: 477 IAEKKGVFINKRVQHTVYDVHKVL 548
+ G + K V D H V+
Sbjct: 206 V----GKALPKSVPLVQVDAHNVV 225
>AE013599-514|AAF59185.1| 555|Drosophila melanogaster CG11205-PA,
isoform A protein.
Length = 555
Score = 37.5 bits (83), Expect = 0.012
Identities = 35/144 (24%), Positives = 60/144 (41%)
Frame = +3
Query: 117 KMSKTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFL 296
K S V++W D R+ DN AL A A + L ++ L P + I +F+
Sbjct: 110 KESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT-IRHYKFM 168
Query: 297 LQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 476
+ L+ ++L G AV+ LP+ + + C D P + + +++ED
Sbjct: 169 MGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVC--DFAPLRLPR-QWVED 225
Query: 477 IAEKKGVFINKRVQHTVYDVHKVL 548
+ G + K V D H V+
Sbjct: 226 V----GKALPKSVPLVQVDAHNVV 245
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,106,282
Number of Sequences: 53049
Number of extensions: 378690
Number of successful extensions: 845
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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