Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e24f
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-1|CAB01566.1| 107|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z50858-6|CAD44135.1| 949|Caenorhabditis elegans Hypothetical pr... 28 3.9
AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical ... 28 3.9
AL021567-6|CAD44122.1| 949|Caenorhabditis elegans Hypothetical ... 28 3.9
AL021567-2|CAD44121.1| 947|Caenorhabditis elegans Hypothetical ... 28 3.9
AL021567-1|CAA16508.2| 898|Caenorhabditis elegans Hypothetical ... 28 3.9
Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical p... 27 6.7
Z77657-7|CAH60768.1| 320|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-relat... 27 6.7
AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a prote... 27 8.9
>Z78198-1|CAB01566.1| 107|Caenorhabditis elegans Hypothetical
protein F55C5.1 protein.
Length = 107
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 198 INEAENRKHLLRPIY-FLDPNIKDKVGINRL 287
+ + N + +RP+Y F+DP K K+ INR+
Sbjct: 34 VKSSNNEHYRVRPVYGFIDPKGKTKLDINRI 64
>Z50858-6|CAD44135.1| 949|Caenorhabditis elegans Hypothetical
protein F21A10.2c protein.
Length = 949
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 159 DLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGI 278
D+R+ DN+ + A + EN + L YF P + K G+
Sbjct: 501 DIRLKDNITEKGAKDALENLQKLRIVDYFYKPEVASKWGL 540
>AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical
protein Y6B3B.3 protein.
Length = 995
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 518 LYSLVNEYTFLLSNVFNVFILLYKLRIYIHLTC 420
L++ ++++ LL ++ N F L LR++ H TC
Sbjct: 158 LWNGYHDFSNLLKDIKNKFFLRIILRVFFHFTC 190
>AL021567-6|CAD44122.1| 949|Caenorhabditis elegans Hypothetical
protein F21A10.2c protein.
Length = 949
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 159 DLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGI 278
D+R+ DN+ + A + EN + L YF P + K G+
Sbjct: 501 DIRLKDNITEKGAKDALENLQKLRIVDYFYKPEVASKWGL 540
>AL021567-2|CAD44121.1| 947|Caenorhabditis elegans Hypothetical
protein F21A10.2b protein.
Length = 947
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 159 DLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGI 278
D+R+ DN+ + A + EN + L YF P + K G+
Sbjct: 499 DIRLKDNITEKGAKDALENLQKLRIVDYFYKPEVASKWGL 538
>AL021567-1|CAA16508.2| 898|Caenorhabditis elegans Hypothetical
protein F21A10.2a protein.
Length = 898
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 159 DLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGI 278
D+R+ DN+ + A + EN + L YF P + K G+
Sbjct: 450 DIRLKDNITEKGAKDALENLQKLRIVDYFYKPEVASKWGL 489
>Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical
protein Y48E1B.13a protein.
Length = 536
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 381 IDPQLFLSKHTDKCLISLNCYLNLLSF 301
ID F ++ T K ISL+CY L+S+
Sbjct: 153 IDSVDFWNRFTSKATISLDCYSRLISY 179
>Z77657-7|CAH60768.1| 320|Caenorhabditis elegans Hypothetical
protein F08H9.12 protein.
Length = 320
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -3
Query: 542 FMYIINCMLYSLVNEYTFLLSNVFNVFILLYKLRIYIHLTC*IFYLPVIK*LRQ*IHSFS 363
F+ +N + Y N LLS + + +LL+ L I + L + Y+PV+ R+ H S
Sbjct: 160 FLCYLNSIQYFSENNLQSLLS--YYMILLLF-LNIVLPLLTPLIYIPVMIVTRKNSHQHS 216
Query: 362 SQNI 351
Q+I
Sbjct: 217 QQHI 220
>AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-related
protein 1A protein.
Length = 536
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 381 IDPQLFLSKHTDKCLISLNCYLNLLSF 301
ID F ++ T K ISL+CY L+S+
Sbjct: 153 IDSVDFWNRFTSKATISLDCYSRLISY 179
>AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a protein
protein 195 protein.
Length = 458
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 390 LFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVH 539
L DDW + L V + E ++DE ED E++G+ V V+ V+
Sbjct: 383 LDDDWHEEELVGAVGAEEEEDEEDEEEEDEDEEEGMADVPEVNEAVHRVN 432
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,475
Number of Sequences: 27780
Number of extensions: 214367
Number of successful extensions: 497
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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