Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e24f
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     91   5e-21
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 91.5 bits (217), Expect = 5e-21
 Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 2/138 (1%)
 Frame = +3

Query: 141 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEX 314
           +HWFR  LR+HDN +LR  +  A       R ++ LDP       +GIN+ RFLLQ LE 
Sbjct: 24  VHWFRKGLRLHDNPSLREGLAGAST----FRCVFVLDPWFAGSTNIGINKWRFLLQCLED 79

Query: 315 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 494
                    + L+V+RG+  D LPKLF +W    LT + D +P    +D  I  + ++ G
Sbjct: 80  LDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELG 139

Query: 495 VFINKRVQHTVYDVHKVL 548
           + + ++V HT+Y + +++
Sbjct: 140 ISVVQKVSHTLYKLDEII 157


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 384 PKLFDDWQVKYLTCQVDIDPEF 449
           P + DD + ++ TC +D+ P +
Sbjct: 171 PVVLDDSKEEHPTCALDLTPTY 192


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 5    IYSTHYTLHSKI*NSYLQNKNLSFVSAKLIIL 100
            IY+   T+  +I + Y QNK +S V    I L
Sbjct: 937  IYAQPQTVQDQIVSEYYQNKPISEVIGGAISL 968


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 424 HVKYFTCQSSNNLGN 380
           HVK +T Q  N LGN
Sbjct: 349 HVKLYTKQGLNVLGN 363


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 424 HVKYFTCQSSNNLGN 380
           HVK +T Q  N LGN
Sbjct: 349 HVKLYTKQGLNVLGN 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,503
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)