Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e23f
(555 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical pr... 35 0.045
AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated... 35 0.045
AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type chlo... 35 0.045
Z68270-5|CAA92570.1| 174|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF016662-10|AAB66055.1| 153|Caenorhabditis elegans Hypothetical... 30 1.3
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 29 2.2
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 29 2.2
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 29 2.2
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 29 2.2
U28739-7|AAB93458.1| 681|Caenorhabditis elegans Cell division c... 28 5.2
U28739-6|AAM54206.1| 695|Caenorhabditis elegans Cell division c... 28 5.2
U28739-4|AAM54205.1| 693|Caenorhabditis elegans Cell division c... 28 5.2
U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division c... 28 5.2
L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncog... 28 5.2
AY661746-1|AAT74545.1| 695|Caenorhabditis elegans CDC-14 phosph... 28 5.2
AY661745-1|AAT74544.1| 681|Caenorhabditis elegans CDC-14 phosph... 28 5.2
AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14 phosph... 28 5.2
AY661743-1|AAT74542.1| 693|Caenorhabditis elegans CDC-14 phosph... 28 5.2
AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isofor... 28 5.2
AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein. 28 5.2
AF000363-1|AAB94407.1| 681|Caenorhabditis elegans protein phosp... 28 5.2
AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell... 28 5.2
AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell... 28 5.2
U80024-7|AAW88409.1| 295|Caenorhabditis elegans Serpentine rece... 27 9.1
>Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical
protein R07B7.1 protein.
Length = 796
Score = 34.7 bits (76), Expect = 0.045
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 344 KLTVTFKFGEISRDGSVQVLATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 502
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated
chloride channelCLH-6 protein.
Length = 796
Score = 34.7 bits (76), Expect = 0.045
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 344 KLTVTFKFGEISRDGSVQVLATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 502
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type
chloride channel CLH-6 protein.
Length = 796
Score = 34.7 bits (76), Expect = 0.045
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 344 KLTVTFKFGEISRDGSVQVLATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 502
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>Z68270-5|CAA92570.1| 174|Caenorhabditis elegans Hypothetical
protein ZC410.5a protein.
Length = 174
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 161 QGIWYEISKFPNESEKNGK--CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDAN 334
QG+ ++ F + +N K S+ + +LE +V +VK+ ++ G+K+ ++G L +DA
Sbjct: 36 QGVTSDVGNFFSNQFQNAKDLFSNDQNELEKNVQRVKD--LLTGLKEKVKGLEPLANDAQ 93
Query: 335 KAAKLTVTFKFGEIS 379
K V E+S
Sbjct: 94 KETLKKVDGFLAEVS 108
>Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical
protein F29C12.5 protein.
Length = 468
Score = 29.9 bits (64), Expect = 1.3
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +2
Query: 179 ISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDG-VKKYIEGTAKL-TDDANKAAKLT 352
+S P +S KN S+ E+ VVK +N HI+ + + E KL D +A K
Sbjct: 129 MSGLPKKSPKNFDESNKEFSDGIVVVKHQNFHILKKFLAFHCEYLEKLFFGDFKEAGKAE 188
Query: 353 VTFKFGEISRDGSVQVLATDYNNYAI 430
VT K IS +LA Y +YAI
Sbjct: 189 VTLK--AISSTDFHYLLAVLYEDYAI 212
>AF016662-10|AAB66055.1| 153|Caenorhabditis elegans Hypothetical
protein C33C12.1 protein.
Length = 153
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 303 KGRPSSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIIT--TPSLTTANTMTRKSLIKC 476
+ RP SP+ +KP+ + L+L A D +KS L ++T P L + K+ I
Sbjct: 81 ENRPKSPSVSLKPKRPEDFLTL----ASDDYKSEILPVLTGFKPILLETLRKSSKNSISQ 136
Query: 477 SSGSSLETRSLK 512
+ G + + LK
Sbjct: 137 NFGQNFREKMLK 148
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 110 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 244
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 110 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 244
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 110 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 244
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 110 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 244
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>U28739-7|AAB93458.1| 681|Caenorhabditis elegans Cell division
cycle related protein14, isoform c protein.
Length = 681
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 165 ASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCIS----STASRSI*KGRPSSPTTP 332
+SG SR T N++ T +RT S S ASR R SPTTP
Sbjct: 507 SSGTSSRQLKTTPNGNVAYRTRNSSGNTTSTLTRTPASAVFPSMASRRSETTRYLSPTTP 566
Query: 333 IKPQS 347
IKP S
Sbjct: 567 IKPMS 571
>U28739-6|AAM54206.1| 695|Caenorhabditis elegans Cell division
cycle related protein14, isoform d protein.
Length = 695
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 165 ASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCIS----STASRSI*KGRPSSPTTP 332
+SG SR T N++ T +RT S S ASR R SPTTP
Sbjct: 507 SSGTSSRQLKTTPNGNVAYRTRNSSGNTTSTLTRTPASAVFPSMASRRSETTRYLSPTTP 566
Query: 333 IKPQS 347
IKP S
Sbjct: 567 IKPMS 571
>U28739-4|AAM54205.1| 693|Caenorhabditis elegans Cell division
cycle related protein14, isoform a protein.
Length = 693
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 165 ASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCIS----STASRSI*KGRPSSPTTP 332
+SG SR T N++ T +RT S S ASR R SPTTP
Sbjct: 507 SSGTSSRQLKTTPNGNVAYRTRNSSGNTTSTLTRTPASAVFPSMASRRSETTRYLSPTTP 566
Query: 333 IKPQS 347
IKP S
Sbjct: 567 IKPMS 571
>U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division
cycle related protein14, isoform b protein.
Length = 1063
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 165 ASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCIS----STASRSI*KGRPSSPTTP 332
+SG SR T N++ T +RT S S ASR R SPTTP
Sbjct: 507 SSGTSSRQLKTTPNGNVAYRTRNSSGNTTSTLTRTPASAVFPSMASRRSETTRYLSPTTP 566
Query: 333 IKPQS 347
IKP S
Sbjct: 567 IKPMS 571
>L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncogene
protein.
Length = 813
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 270 CISSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYHA 383
C SS+ R +SP+TP+ P+ SL SL +H+
Sbjct: 31 CASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSGHHS 68
>AY661746-1|AAT74545.1| 695|Caenorhabditis elegans CDC-14
phosphatase isoform D protein.
Length = 695
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 165 ASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCIS----STASRSI*KGRPSSPTTP 332
+SG SR T N++ T +RT S S ASR R SPTTP
Sbjct: 507 SSGTSSRQLKTTPNGNVAYRTRNSSGNTTSTLTRTPASAVFPSMASRRSETTRYLSPTTP 566
Query: 333 IKPQS 347
IKP S
Sbjct: 567 IKPMS 571
>AY661745-1|AAT74544.1| 681|Caenorhabditis elegans CDC-14
phosphatase isoform C protein.
Length = 681
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 165 ASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCIS----STASRSI*KGRPSSPTTP 332
+SG SR T N++ T +RT S S ASR R SPTTP
Sbjct: 507 SSGTSSRQLKTTPNGNVAYRTRNSSGNTTSTLTRTPASAVFPSMASRRSETTRYLSPTTP 566
Query: 333 IKPQS 347
IKP S
Sbjct: 567 IKPMS 571
>AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14
phosphatase isoform B protein.
Length = 1063
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 165 ASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCIS----STASRSI*KGRPSSPTTP 332
+SG SR T N++ T +RT S S ASR R SPTTP
Sbjct: 507 SSGTSSRQLKTTPNGNVAYRTRNSSGNTTSTLTRTPASAVFPSMASRRSETTRYLSPTTP 566
Query: 333 IKPQS 347
IKP S
Sbjct: 567 IKPMS 571
>AY661743-1|AAT74542.1| 693|Caenorhabditis elegans CDC-14
phosphatase isoform A protein.
Length = 693
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 165 ASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCIS----STASRSI*KGRPSSPTTP 332
+SG SR T N++ T +RT S S ASR R SPTTP
Sbjct: 507 SSGTSSRQLKTTPNGNVAYRTRNSSGNTTSTLTRTPASAVFPSMASRRSETTRYLSPTTP 566
Query: 333 IKPQS 347
IKP S
Sbjct: 567 IKPMS 571
>AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isoform 2
protein.
Length = 813
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 270 CISSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYHA 383
C SS+ R +SP+TP+ P+ SL SL +H+
Sbjct: 31 CASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSGHHS 68
>AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein.
Length = 813
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 270 CISSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYHA 383
C SS+ R +SP+TP+ P+ SL SL +H+
Sbjct: 31 CASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSGHHS 68
>AF000363-1|AAB94407.1| 681|Caenorhabditis elegans protein
phosphatase CDC14 protein.
Length = 681
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 165 ASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCIS----STASRSI*KGRPSSPTTP 332
+SG SR T N++ T +RT S S ASR R SPTTP
Sbjct: 507 SSGTSSRQLKTTPNGNVAYRTRNSSGNTTSTLTRTPASAVFPSMASRRSETTRYLSPTTP 566
Query: 333 IKPQS 347
IKP S
Sbjct: 567 IKPMS 571
>AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform b protein.
Length = 614
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 270 CISSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYHA 383
C SS+ R +SP+TP+ P+ SL SL +H+
Sbjct: 73 CASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSGHHS 110
>AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform a protein.
Length = 813
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 270 CISSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYHA 383
C SS+ R +SP+TP+ P+ SL SL +H+
Sbjct: 31 CASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSGHHS 68
>U80024-7|AAW88409.1| 295|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 7 protein.
Length = 295
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 365 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAV 532
F + D VLA Y ++I Y+C + ++ + HQ F+ + + G +T V
Sbjct: 50 FYRLFLDVVYNVLAGAYMTFSILYSC-FTEEFREHQAFIVYIGFPLQTSGAIRTIV 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,938,300
Number of Sequences: 27780
Number of extensions: 206079
Number of successful extensions: 729
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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