Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e21r
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   161   4e-41
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    29   0.25 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.75 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   0.99 
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.0  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   4.0  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   5.3  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   7.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   9.3  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    24   9.3  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  161 bits (391), Expect = 4e-41
 Identities = 75/97 (77%), Positives = 88/97 (90%)
 Frame = -2

Query: 315 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 136
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 135 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 25
           TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSI 104


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -2

Query: 198 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSIKH 19
           K+ +KGP  +P K+   T  ++P    S + + F+   H R+I L+S + +  + T   +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPVTLE-TFFSY 149

Query: 18  RARC 7
             +C
Sbjct: 150 LRKC 153


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 0.75
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 333  VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 184
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 342 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 244
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 136 NSLW*RFKDLGSFSDENPQESDRPTL 59
           N+ W RFK+ G + DE+  E + P+L
Sbjct: 35  NNEW-RFKNAGEYFDEDNNEEEYPSL 59


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 361 IPAEINNFSIKNCSALNRRNL 423
           + +E+N+  IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 62  CRSITLLWILI*KRSQVFEPSPQ 130
           C +  L W+   KRSQ   PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 141 RKTPCGEGSKTWDRFQM 91
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 187  KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDENPQESD 71
            K P+ +ANQ P   +  N+ W +    G FS+ N    D
Sbjct: 916  KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 51  QRESVGRSLSCGFSSENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVS 206
           +R SV  + SC  S  N P S+   + +   W          LG LH +S S
Sbjct: 626 KRNSVLSNKSCASSESNTPASVKQDYDDIQSWTIIEE--IQSLGVLHLSSPS 675


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = +3

Query: 300 LPGVSQCLCLTLQRLPCCLLN---SGR---DKQLFNQKLFSAEPEKPHV 428
           LP   +C+ LT ++LP        SGR   D  + N    S  P+  HV
Sbjct: 489 LPETFECISLTYRKLPDSWKQDKCSGRDDLDNSVLNDDYISVAPKPSHV 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,963
Number of Sequences: 5004
Number of extensions: 38505
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)