Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e21r
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   2.7  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   3.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 199 EAACKGPSPHANQDPAYHH 143
           E +  G SPH +Q P+ +H
Sbjct: 621 EISQDGSSPHFHQSPSQNH 639


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 330 TLQRLPCCLLNSGRD 374
           TL R PC LLN   D
Sbjct: 22  TLGRFPCLLLNGKXD 36


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 217 QWSQETEAACKGPSPHANQDP 155
           Q SQ+  +   GP P  +Q P
Sbjct: 11  QQSQQPSSGAPGPQPSPHQSP 31


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 277 QDHSYFTQCALAREGLC*PNQWSQETEAACK 185
           +DH   TQC   R+G         ET +AC+
Sbjct: 618 RDHKDVTQCISCRQGTV-----PDETHSACR 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,484
Number of Sequences: 438
Number of extensions: 2829
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)