Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e19r
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   8e-18
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        30   1.7  
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)               30   1.7  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   3.0  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     29   3.0  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          29   5.3  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          29   5.3  
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)                       28   9.2  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         28   9.2  
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 48/81 (59%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
 Frame = -1

Query: 711 MVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYA 535
           +VPA P   + A R FQT+S  +D+DSAAKF                   VFGSLIIGYA
Sbjct: 75  VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSGAGIGTVFGSLIIGYA 134

Query: 534 RNPSLKQQLFSYAILGFALSE 472
           RNPSLKQQLFSYAILGFALSE
Sbjct: 135 RNPSLKQQLFSYAILGFALSE 155


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = +1

Query: 490  QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 651
            QNG + E++L++  G + G  +       ++T    S T + H  CT  ++     + L 
Sbjct: 1728 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 1787

Query: 652  DRCGLEGPHCRELCRDS 702
              C  +  +CR +C D+
Sbjct: 1788 INCPKKCKYCRPVCEDT 1804


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = +1

Query: 490 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 651
           QNG + E++L++  G + G  +       ++T    S T + H  CT  ++     + L 
Sbjct: 52  QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 111

Query: 652 DRCGLEGPHCRELCRDS 702
             C  +  +CR +C D+
Sbjct: 112 INCPKKCKYCRPVCEDT 128


>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
          Length = 565

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 622 EFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 726
           E   R NVLSD  GLE   CR  LC +  +  C  G
Sbjct: 76  EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 391 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 498
           +V  LK    ESEE  E  H  EQ H  +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 406 KVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSS- 582
           K++ L+  E Q   H + +  +L     +N V    + +G       +EGAE     SS 
Sbjct: 204 KIDELDEIESQTSEHASNEMQNL---SFENNV--WTVTDGDKEQETGEEGAEPTPGESSP 258

Query: 583 --GTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCREL 690
             GT+ +      +++  +  N LS++C +   HC EL
Sbjct: 259 GAGTAPNALPNADSSKKLAEFNELSEKCRIMRVHCLEL 296


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 739 TCSSTHPYTDGTCCPYTALCSAV 671
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 739 TCSSTHPYTDGTCCPYTALCSAV 671
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
 Frame = -3

Query: 598 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 518
           G +WF SW W  +   LPH+     + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294


>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
          Length = 519

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 604 RCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRY 708
           R T T +FG +VN+ S    LEG   R+   D+ +
Sbjct: 16  RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +1

Query: 421 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 561
           +  + QER  +TEQTH       QG+ Q    +Q  ++G   G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686


>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 403 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 495
           LK    E E+QQ +HHK E+     Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,700,074
Number of Sequences: 59808
Number of extensions: 506850
Number of successful extensions: 1551
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)