Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e19r
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 77 2e-14
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 77 2e-14
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 77 2e-14
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 30 2.0
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 4.6
AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical ... 29 4.6
Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical pr... 28 6.1
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 28 6.1
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 28 8.1
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 28 8.1
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 76.6 bits (180), Expect = 2e-14
Identities = 41/70 (58%), Positives = 44/70 (62%)
Frame = -1
Query: 681 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFS 502
A R TT KDIDSAAK+ VFG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 501 YAILGFALSE 472
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 76.6 bits (180), Expect = 2e-14
Identities = 41/70 (58%), Positives = 44/70 (62%)
Frame = -1
Query: 681 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFS 502
A R TT KDIDSAAK+ VFG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 501 YAILGFALSE 472
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 76.6 bits (180), Expect = 2e-14
Identities = 41/70 (58%), Positives = 44/70 (62%)
Frame = -1
Query: 681 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFS 502
A R TT KDIDSAAK+ VFG+L+IGYARNPSLKQQLFS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89
Query: 501 YAILGFALSE 472
YAILGFALSE
Sbjct: 90 YAILGFALSE 99
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +1
Query: 565 CSNTS-SGTSYSHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGY 729
CS+ + S SHC T + RV ++ C P CR +LC SRY M Y
Sbjct: 296 CSHPAFSEVMASHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENY 355
Query: 730 CCK 738
C K
Sbjct: 356 CPK 358
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 384 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 298
P + VSVY I PWN +F ++V Q
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57
>AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical
protein F28A10.1 protein.
Length = 311
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 428 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 556
KSSR I ++ I KP E N C+ + FLA PM E
Sbjct: 21 KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63
>Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical
protein C08B6.6 protein.
Length = 218
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 259 PVDAHCRCNTHQSLHHYEGEV 321
P+ CRCNT +LH EG V
Sbjct: 98 PIYVLCRCNTTNTLHRREGVV 118
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = +1
Query: 394 VVFLKVNSLESEEQQERHHKT---EQTHSLRQGETQNGV*EQLLLEGGVPGIADD----- 549
V+ +S E E+++ERH + ++T S+R T + + +++ + +A
Sbjct: 9 VIIDSSDSSEDEDRKERHSSSSEVDETASMRS--TDSSEPPRTIIDASLNSMASTVYTST 66
Query: 550 -EGAEDCSNTSSGTSYSHCRCTSTNEFGSR 636
+ S T S T+Y +C++ + + SR
Sbjct: 67 PNSKQSISRTGSSTTYGSSKCSTDDHYRSR 96
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +1
Query: 460 QTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 636
Q+ S + G +G + L G G D+ + CS S G + S C C +
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568
Query: 637 VNVLSDRCGLEGPHCRELCRDSRY 708
+ G GP C E CR RY
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY 1591
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +1
Query: 460 QTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 636
Q+ S + G +G + L G G D+ + CS S G + S C C +
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568
Query: 637 VNVLSDRCGLEGPHCRELCRDSRY 708
+ G GP C E CR RY
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY 1591
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,236,468
Number of Sequences: 27780
Number of extensions: 356720
Number of successful extensions: 1187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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