Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e18r
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    34   0.026
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    32   0.10 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    31   0.14 
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    30   0.31 
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    27   2.2  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    27   2.2  
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   6.8  

>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 616 PFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKV 476
           P  V  V M +   G +     ++  I+SIYK++GI G   G +P++
Sbjct: 224 PLEVARVEMQSLTKGIQHSSPGIMQTIMSIYKNNGIKGLYRGAVPRM 270



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 625 IAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIP 482
           +  P  V  V+M A+         ++  AI +I    GILGF  GLIP
Sbjct: 28  LGQPLEVTKVQMAAN------RTQTMAQAIKAIMSRGGILGFYQGLIP 69


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 640 TVAVVIAHPFHVVSVRMMASFIGKEEHYSSL-LGAIVSIYKDDGILGFLHGLIPKVLG 470
           +VA +  +P   +  R+  S + + +H  S+ L     +YK  GI G+  G++  +LG
Sbjct: 240 SVAQMFIYPVDTLKFRIQCSDLSRGQHGKSIILSNAKELYKSVGIRGYYRGVLVGILG 297


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 637 VAVVIAHPFHVVSVRMMASFI-GKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLT 461
           +   +  P  V+  R   + I G   +Y ++  AI  IYK +GI GF  G    +L  + 
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIPGIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIP 298

Query: 460 CLAVT 446
            +++T
Sbjct: 299 VMSIT 303



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 595 RMMASF-IGKEEHYSSLLGAIVSIYKDDGILGFLHG 491
           RM   F +   + Y+SL   +V I+  +G++GF  G
Sbjct: 43  RMKIIFQVQNNKEYTSLTSTLVKIWNREGLIGFFRG 78


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 625 IAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGL 488
           +++PF V   +M    I K + +  L   + + YK+ G+ GF  GL
Sbjct: 253 VSYPFEVCRRKMQIGGIRKNKSFLRLKQVVQTTYKEAGMRGFFVGL 298


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 673 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 566
           +K+G +D     V    AHPFHVV +  M S  G +
Sbjct: 77  VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 673 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 566
           +K+G +D     V    AHPFHVV +  M S  G +
Sbjct: 77  VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 481 KVLGDLTCLAVTGVLAYYVNKYF 413
           ++  D+TC  V   L Y+VNK+F
Sbjct: 66  EIANDVTCGRVETALLYFVNKFF 88


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -1

Query: 439  LAYYVNKYFVKTKDLRYYTIPLLTFITSTITYPMVVVSTCM 317
            L +Y +  F+  +   +YT+  +  + S  T+ +++ STC+
Sbjct: 1021 LLFYCSSIFISKE---FYTVEQMVQVLSLATFTLLMASTCI 1058


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,944
Number of Sequences: 5004
Number of extensions: 65669
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)