Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e18r
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.)              103   2e-22
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)                   41   0.001
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)              40   0.003
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)             38   0.012
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)                   36   0.027
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)                    33   0.19 
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)                    33   0.25 
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)                   33   0.33 
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)                   32   0.44 
SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)                   30   2.3  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              28   9.5  

>SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score =  103 bits (246), Expect = 2e-22
 Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
 Frame = -1

Query: 607 VVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLTCLAVTGVLAYY 428
           +++VRM+  F+GKE  Y+ L  +I  IY + GILGF  GL+P++ G++  L +   + + 
Sbjct: 133 LITVRMVVQFVGKEAIYTGLTSSIKEIYNEHGILGFFAGLVPRIAGEVLSLWMYRSVVFI 192

Query: 427 VNKYFV-----KTKDLRYYTIPLLTFITSTITYPMVVVSTCMAVAGSSLKAGNPPAMPNY 263
           +NK+F+     + K++  YT  L  +++S  TYP VVVS  M      L AG PPAMP Y
Sbjct: 193 INKFFLDSEMAERKEVTVYTTALSQWLSSMFTYPFVVVSNNMISNNVGLAAGEPPAMPVY 252

Query: 262 PSWQVCWRDLMR 227
             W  C++ + +
Sbjct: 253 ADWVDCFKHMRK 264


>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 375

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -1

Query: 637 VAVVIAHPFHVVSVRMMASFIGKEE-HYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLT 461
           +A+V  +P  V+  R+    + K   HY  +  A+ +I +++GIL    G+ P  LG L 
Sbjct: 165 IAMVTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPSFLG-LF 223

Query: 460 CLAVTGVLAYYV 425
             A    LAY +
Sbjct: 224 PFAGGSFLAYQI 235


>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
          Length = 577

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -1

Query: 637 VAVVIAHPFHVVSVRMMASFIGKEE-HYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLT 461
           +A+V  +P  V+  R+    + K   HY  +  A+ +I +++GIL    G+ P  L  L 
Sbjct: 434 IAMVTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPSFLACLQ 493

Query: 460 CLAVTGVL 437
             AV GV+
Sbjct: 494 --AVLGVI 499


>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
          Length = 95

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 16/55 (29%), Positives = 32/55 (58%)
 Frame = -1

Query: 634 AVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLG 470
           A ++ +P  +V  R+    I +++ Y+ L+ A   IY+D+G+  F  G +P ++G
Sbjct: 3   AALLTYPLDMVRARLA---ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIG 54


>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 264

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = -1

Query: 637 VAVVIAHPFHVVSVRM-MASFIGKEEHYSSLLGAIVSIYKDDGI-LGFLHGLIPKVLGDL 464
           V+  IA+P  VV  RM +A  +     Y++ +  +V++YKDDGI  G   GL    L   
Sbjct: 185 VSQTIAYPLDVVRRRMQLAGAVPDGHKYNTCINTLVNVYKDDGIRRGLYRGLSINYLRVC 244

Query: 463 TCLAVT-GVLAYYVNKYFV 410
             +A+  GV  Y V K F+
Sbjct: 245 PQVAIMFGV--YEVTKQFL 261


>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -1

Query: 619 HPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLG 470
           +P  V+  R+    I K   Y  LL A   IY+ +GI  F  GL P +LG
Sbjct: 249 YPLEVLKTRLA---IRKTGQYRGLLHAASVIYQKEGIRSFYRGLFPSLLG 295


>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 434

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 637 VAVVIAHPFHVVSVRMMASFIGKEE--HYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDL 464
           VA    HP  VV  R+    +      +Y+ ++ A+  I+ ++GI G   GL+P ++   
Sbjct: 41  VATASTHPLDVVRARLTVQDMSTRSISNYTGIVSALRRIHIEEGIRGLYKGLVPSLVSIA 100

Query: 463 TCLAV 449
             L V
Sbjct: 101 PFLGV 105


>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 276

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 23/81 (28%), Positives = 40/81 (49%)
 Frame = -1

Query: 568 EEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKDLRY 389
           + HY  +LG +V+++K +G+     GLIP +   L C A   +  Y   K      D++ 
Sbjct: 63  DAHYRGMLGTMVTLFKTEGMKTMYKGLIPGIHRQL-CFASIRIGLYDQVKAMYGDTDVQ- 120

Query: 388 YTIPLLTFITSTITYPMVVVS 326
               +L  I ++IT  ++ VS
Sbjct: 121 -NPKILKKIAASITTGIMAVS 140


>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 612

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = -1

Query: 637 VAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLTC 458
           +A V+  P  VV  R+  +       Y S   A+V+I +  GI G   GL+P+ +     
Sbjct: 536 MASVVTQPADVVKTRLQMN----PYMYPSNRAAVVAIIEAGGIEGLFRGLVPRTVRRTLM 591

Query: 457 LAVTGVLAYYVNKYF 413
            A+   +   V++YF
Sbjct: 592 SAMAWTIYEEVSRYF 606



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -1

Query: 643 QTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGD 467
           +T+A V   P  VV  R  +       +Y+S+  A+VSI+ ++G  G   GL+  V  D
Sbjct: 440 RTIAGVCMMPVTVVKTRYESGNF----NYTSMRQALVSIWTNEGGRGLYSGLVATVARD 494


>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 200

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -1

Query: 625 IAHPFHVVSVRM-MASFIGKEEHYSSLLGAIVSIYKDDGI-LGFLHGLIPKVLGDLTCLA 452
           +A+P  VV  RM +A  +     YS+ +   +S+Y +DGI  G   GL    L     +A
Sbjct: 123 LAYPLDVVRRRMQLAGTVADGHKYSTCINTFISVYTEDGIRRGLYRGLSINYLRVCPQVA 182

Query: 451 VTGVLAYYVNKYFVKTKD 398
           V   +   V +   K ++
Sbjct: 183 VMFAVYEVVKQLLTKAEE 200


>SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = -1

Query: 607 VVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLTCLAVTGVLAYY 428
           ++ V M+ SF        S    I+ I K   +L F  GL    +GDLT   + GVL  +
Sbjct: 75  IMGVSMVLSFRVLRRKQISTYRIIIKITKRTLLL-FALGLFTSNMGDLTNYRIPGVLQRF 133

Query: 427 VNKYFV 410
              YFV
Sbjct: 134 AACYFV 139


>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 274

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 616 PFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVL 473
           PF V+  R+ A     +  Y  ++   +  YK++G++ F  G+ P +L
Sbjct: 152 PFDVIKSRIQADGNLGKFRYKGMMDCALQSYKEEGMIVFTRGIWPTLL 199


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 329 YHNHWICYCACYKCKQWNRVISKIFSLNKI 418
           ++N ++C C     KQW R  S I+SLN I
Sbjct: 268 HNNPFVCDCKLSWLKQWIRTRSLIYSLNLI 297


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 311 YCHTGRYHNHWICYCACYKC 370
           YC+   Y+ ++ CYC CY C
Sbjct: 481 YCYC-YYYCYYYCYCYCYYC 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,566,762
Number of Sequences: 59808
Number of extensions: 501854
Number of successful extensions: 1031
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)