Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12e18r
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000264-10|AAC71129.2| 272|Caenorhabditis elegans Hypothetical... 85 5e-17
U00052-8|AAK21421.2| 707|Caenorhabditis elegans Hypothetical pr... 36 0.024
X76114-1|CAA53720.1| 290|Caenorhabditis elegans Oxoglutarate/ma... 35 0.073
U23525-8|AAC46570.1| 290|Caenorhabditis elegans Hypothetical pr... 35 0.073
AF000264-11|AAN39675.2| 65|Caenorhabditis elegans Hypothetical... 35 0.073
Z79755-2|CAB02107.1| 294|Caenorhabditis elegans Hypothetical pr... 34 0.096
U21317-1|AAA62524.2| 627|Caenorhabditis elegans Na/h exchanger ... 32 0.39
AF497824-1|AAM18102.1| 644|Caenorhabditis elegans putative Na-H... 32 0.39
AF497830-1|AAM18108.1| 533|Caenorhabditis elegans putative Na-H... 31 0.68
AF098995-2|AAC67478.2| 538|Caenorhabditis elegans Na/h exchange... 31 0.68
AF098995-1|AAR30204.1| 634|Caenorhabditis elegans Na/h exchange... 31 0.68
Z49207-2|CAA89069.1| 298|Caenorhabditis elegans Hypothetical pr... 31 0.90
AF125963-3|AAD14744.2| 356|Caenorhabditis elegans Serpentine re... 29 2.7
Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical pr... 29 3.6
X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein ... 29 3.6
U64857-6|AAN84847.1| 172|Caenorhabditis elegans Hypothetical pr... 29 3.6
U64842-4|AAB37086.2| 306|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z74028-1|CAA98424.1| 334|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81577-1|CAB04651.3| 289|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z69662-5|CAA93500.3| 449|Caenorhabditis elegans Hypothetical pr... 28 8.4
>AF000264-10|AAC71129.2| 272|Caenorhabditis elegans Hypothetical
protein F43E2.7a protein.
Length = 272
Score = 85.0 bits (201), Expect = 5e-17
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Frame = -1
Query: 673 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLH 494
I+ G RD +++ VAV A PF V R +A IG E Y++ A+ I K +G G
Sbjct: 74 IRNGFRDSVIRVVAVTAARPFAVCFARQVAQVIGNETKYTTCAQALAVIGKQEGPGGLFS 133
Query: 493 GLIPKVLGDLTCLAVTGVLAYYVNKYFVK----------------TKDLRYYTIPLLTFI 362
GL P+++G+L + ++ + + + ++ KD+ + + F+
Sbjct: 134 GLAPQIVGELLVIWGVHLITHGIQRAILRIEFGDTKNKDETKAKAAKDVHKFIHTAVPFL 193
Query: 361 TSTITYPMVVVSTCMAVAGSSLKAGNPPAMPNYPSWQVCWRDLMRNKQHKRGSSLIFRYY 182
++ YP VVST MAVAGS L P P++ +W W D +R KRG+ L R
Sbjct: 194 VNSFGYPYSVVSTVMAVAGSGLAVSFLPYSPSFNNWHGAW-DYLRPIGLKRGNRLFLREQ 252
Query: 181 IAPIS 167
+ ++
Sbjct: 253 VGAVT 257
>U00052-8|AAK21421.2| 707|Caenorhabditis elegans Hypothetical
protein K02F3.2 protein.
Length = 707
Score = 36.3 bits (80), Expect = 0.024
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Frame = -1
Query: 619 HPFHVVSVRMM-----ASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLTCL 455
+P +V RM SF+G E Y + L + K +G+LG GL+P+++G
Sbjct: 388 YPIDLVKTRMQNQRTSGSFVG-EVMYKNSLDCFKKVVKFEGLLGLYRGLLPQIVGVAPEK 446
Query: 454 AVTGVLAYYVNKYFVKTKDLRYYTIPLL----TFITSTITYPMVVVSTCMAVAGSSLKAG 287
A+ + Y+ F K + Y + T P+ +V + AG +AG
Sbjct: 447 AIKLTMNDYMRDKFTKDGKIPLYGEIIAGGTGGMCQVVFTNPLEIVKIRLQTAGEVQQAG 506
>X76114-1|CAA53720.1| 290|Caenorhabditis elegans
Oxoglutarate/malate carrier protein protein.
Length = 290
Score = 34.7 bits (76), Expect = 0.073
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = -1
Query: 637 VAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAI-VSIYKDDGILGFLHGLIPKVLGDLT 461
+A HP ++ V++ GK +G + + IYK+DGIL F +G+ VL LT
Sbjct: 21 MAACCTHPLDLLKVQLQTQQQGK-----LTIGQLSLKIYKNDGILAFYNGVSASVLRQLT 75
Query: 460 CLAVTGVLAYYVNKYFVKTKDLRYYTIPLL 371
+ V K + + L +Y LL
Sbjct: 76 YSTTRFGIYETVKKQLPQDQPLPFYQKALL 105
>U23525-8|AAC46570.1| 290|Caenorhabditis elegans Hypothetical
protein K11G12.5 protein.
Length = 290
Score = 34.7 bits (76), Expect = 0.073
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = -1
Query: 637 VAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAI-VSIYKDDGILGFLHGLIPKVLGDLT 461
+A HP ++ V++ GK +G + + IYK+DGIL F +G+ VL LT
Sbjct: 21 MAACCTHPLDLLKVQLQTQQQGK-----LTIGQLSLKIYKNDGILAFYNGVSASVLRQLT 75
Query: 460 CLAVTGVLAYYVNKYFVKTKDLRYYTIPLL 371
+ V K + + L +Y LL
Sbjct: 76 YSTTRFGIYETVKKQLPQDQPLPFYQKALL 105
>AF000264-11|AAN39675.2| 65|Caenorhabditis elegans Hypothetical
protein F43E2.7b protein.
Length = 65
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 319 MAVAGSSLKAGNPPAMPNYPSWQVCWRDLMRNKQHKRGSSLIFRYYIAPIS 167
MAVAGS L P P++ +W W D +R KRG+ L R + ++
Sbjct: 1 MAVAGSGLAVSFLPYSPSFNNWHGAW-DYLRPIGLKRGNRLFLREQVGAVT 50
>Z79755-2|CAB02107.1| 294|Caenorhabditis elegans Hypothetical
protein F43G9.3 protein.
Length = 294
Score = 34.3 bits (75), Expect = 0.096
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 640 TVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLG 470
T A +I +P R+ S + YSSL V YK+ GI G+ P +LG
Sbjct: 122 TTATMITYPLDTAKARLSVS---SKLQYSSLKHVFVKTYKEGGIQLLYRGIYPTILG 175
>U21317-1|AAA62524.2| 627|Caenorhabditis elegans Na/h exchanger
protein 2 protein.
Length = 627
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 6 ITIKLFMWNIIYTKLFTLHTPLLHQLLW 89
+ I L +W I T LF++ TPL+H LL+
Sbjct: 134 VAIALSLWAISLTGLFSVETPLMHMLLF 161
>AF497824-1|AAM18102.1| 644|Caenorhabditis elegans putative Na-H
exchanger isoform 2 protein.
Length = 644
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 6 ITIKLFMWNIIYTKLFTLHTPLLHQLLW 89
+ I L +W I T LF++ TPL+H LL+
Sbjct: 151 VAIALSLWAISLTGLFSVETPLMHMLLF 178
>AF497830-1|AAM18108.1| 533|Caenorhabditis elegans putative Na-H
exchanger isoform 6 protein.
Length = 533
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 6 ITIKLFMWNIIYTKLFTLHTPLLHQLLW 89
+ I +W I T LF++ TPLLH LL+
Sbjct: 152 LAISFSLWAISLTGLFSVETPLLHMLLF 179
>AF098995-2|AAC67478.2| 538|Caenorhabditis elegans Na/h exchanger
protein 6, isoform a protein.
Length = 538
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 6 ITIKLFMWNIIYTKLFTLHTPLLHQLLW 89
+ I +W I T LF++ TPLLH LL+
Sbjct: 152 LAISFSLWAISLTGLFSVETPLLHMLLF 179
>AF098995-1|AAR30204.1| 634|Caenorhabditis elegans Na/h exchanger
protein 6, isoform b protein.
Length = 634
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 6 ITIKLFMWNIIYTKLFTLHTPLLHQLLW 89
+ I +W I T LF++ TPLLH LL+
Sbjct: 152 LAISFSLWAISLTGLFSVETPLLHMLLF 179
>Z49207-2|CAA89069.1| 298|Caenorhabditis elegans Hypothetical
protein R07E3.4 protein.
Length = 298
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = -1
Query: 697 DEPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKD 518
++PK ++ I T + ++ +P V MM + + Y+S ++YK
Sbjct: 205 EDPKSLNFAACWAIAQISITTSGMVCYPLDTVRRSMMMQSGKQIKQYTSTKDCWKTLYKK 264
Query: 517 DGILGFLHGLIPKVL 473
DGI GF G + L
Sbjct: 265 DGINGFYRGALTNSL 279
>AF125963-3|AAD14744.2| 356|Caenorhabditis elegans Serpentine
receptor, class h protein10 protein.
Length = 356
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Frame = +3
Query: 165 AEIGAM*YLNIREEPRLCCLFLIKSLQHT-------CHEG*FGIAGGLPAFKLEPATAIQ 323
A +G++ L +RE R C L H C G G+ G P F +
Sbjct: 225 ATMGSVSLLALREMVRECSSSLRTISMHRGFLISLFCQIGVHGVMLGFPLFVYMTSIVFH 284
Query: 324 VDTTTIGYVIVLVINVSNGIV*YLRSLVLTKYLL 425
D +GYV +++ ++ +G + L +V T+ LL
Sbjct: 285 FDGNDVGYVAIVLASL-HGAMSTLAMIVFTRPLL 317
>Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical
protein ZK455.7 protein.
Length = 1268
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = -1
Query: 493 GLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKDLRYYTIPLLTFITSTITYPMVVVSTCMA 314
G+ +V+ + + + +N+Y + + R I + +P++++ TCMA
Sbjct: 236 GMANEVIAGIRTVMAFNAQPFEINRYAHQLNEARRMGIRKAIILAICTAFPLMLMFTCMA 295
Query: 313 VA---GSSLKAGNPPAMPNYPSWQVCWRDLMRNKQ 218
VA G++L A A+ + + V W L+ ++
Sbjct: 296 VAFWYGATLAAAG--AVSSGAVFAVFWAVLIGTRR 328
>Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical
protein ZK455.7 protein.
Length = 1268
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = -1
Query: 493 GLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKDLRYYTIPLLTFITSTITYPMVVVSTCMA 314
G+ +V+ + + + +N+Y + + R I + +P++++ TCMA
Sbjct: 236 GMANEVIAGIRTVMAFNAQPFEINRYAHQLNEARRMGIRKAIILAICTAFPLMLMFTCMA 295
Query: 313 VA---GSSLKAGNPPAMPNYPSWQVCWRDLMRNKQ 218
VA G++L A A+ + + V W L+ ++
Sbjct: 296 VAFWYGATLAAAG--AVSSGAVFAVFWAVLIGTRR 328
>X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein C
protein.
Length = 1254
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = -1
Query: 493 GLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKDLRYYTIPLLTFITSTITYPMVVVSTCMA 314
G+ +V+ + + + +N+Y + + R I + +P++++ TCMA
Sbjct: 236 GMANEVIAGIRTVMAFNAQPFEINRYAHQLNEARRMGIRKAIILAICTAFPLMLMFTCMA 295
Query: 313 VA---GSSLKAGNPPAMPNYPSWQVCWRDLMRNKQ 218
VA G++L A A+ + + V W L+ ++
Sbjct: 296 VAFWYGATLAAAG--AVSSGAVFAVFWAVLIGTRR 328
>U64857-6|AAN84847.1| 172|Caenorhabditis elegans Hypothetical
protein C37C3.12 protein.
Length = 172
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 347 CYCACYKCKQWNRVISK 397
CYC C KCK++NR+ K
Sbjct: 107 CYCCC-KCKEYNRIHKK 122
>U64842-4|AAB37086.2| 306|Caenorhabditis elegans Hypothetical
protein F25B4.7 protein.
Length = 306
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = -1
Query: 649 IMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVL- 473
++ +A + ++P V R+M K +++ + I IY +G F HG + +
Sbjct: 229 VVTLIAAMTSYPLDTVRRRLMMGAGKKTLPFNNTISCIKYIYTKEGPKAFFHGALVNAIR 288
Query: 472 --GDLTCLAVTGVLAYYV 425
G LA+ L Y+
Sbjct: 289 GTGAALVLAIYNELQKYM 306
>Z74028-1|CAA98424.1| 334|Caenorhabditis elegans Hypothetical
protein C14C10.1 protein.
Length = 334
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 616 PFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIP 482
PF V VRM S + ++ + IYK +G+ GF GL P
Sbjct: 152 PFEAVKVRMQTSSTAPK----TMRECMPMIYKKEGMYGFFKGLPP 192
>Z81577-1|CAB04651.3| 289|Caenorhabditis elegans Hypothetical
protein R11.1 protein.
Length = 289
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 559 YSSLLGAIVSIYKDDGILGFLHGLIPKVL 473
YS + I +YK++G GL+PKV+
Sbjct: 237 YSGTMQTISLVYKEEGFGALYKGLLPKVM 265
>Z69662-5|CAA93500.3| 449|Caenorhabditis elegans Hypothetical
protein F56D5.6 protein.
Length = 449
Score = 27.9 bits (59), Expect = 8.4
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = -1
Query: 739 DLPEINDPPNIVTDDEPKVEDYIKLGR 659
++ E+N+ N++ D++ +ED ++L R
Sbjct: 292 NVEEVNESGNVILDEDENIEDNVELAR 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,325,597
Number of Sequences: 27780
Number of extensions: 367123
Number of successful extensions: 837
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -