Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12e18f
         (592 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.63 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.5  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   5.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.8  

>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 302 PQVNSHRR***PSVLIYLKSMILPTSSPMMNPKLKI 409
           PQ++SH     P +   ++  IL  + PM NP+L++
Sbjct: 87  PQLHSHHG---PPIHHQIRPPILHDTQPMCNPQLQV 119


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 459 NDCYRLHDHVSAS*FDVIFNFGFIIGDDVGRIIDFR*INT 340
           + CYRL        F  +  FGF+  DD G +  F  +NT
Sbjct: 313 SSCYRLLSRNGQ--FIYLRTFGFLEIDDQGTVESFVCVNT 350


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 108 PSHGIRKSFNPAWVRAFGSAPVHDPVWPPSHD 203
           P      S +PA V +  SAP+H P    ++D
Sbjct: 34  PPPATTSSGSPASVASNASAPLHIPAKRAAYD 65


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 481 VSVRMMASFIGKEEHYSSLLGAIVSIYKD 567
           ++ +  ASF+ +    S LLG +V ++ D
Sbjct: 206 INPKNCASFVIEVRKLSRLLGEMVGLFND 234


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 340 GIDLPEINDPPNIV 381
           G  +PEIN  PN+V
Sbjct: 704 GDHVPEINSNPNLV 717


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,551
Number of Sequences: 336
Number of extensions: 3338
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)